Pairwise Alignments

Query, 553 a.a., (Fe-S)-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 161 a.a., ferredoxin-type protein NapF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 46.2 bits (108), Expect = 9e-10
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 406 ISAPYGTIECQTSD-CTLCMSCVAVCPTRALHLA-GDSPALRFIEQDCVQCGLCVKACPE 463
           I  P+   E + +D CT C +C+  C T+ +    G  P + F + +C  C  C   CPE
Sbjct: 21  IRPPWVREEVEFTDVCTRCSACITACETKIIFKGDGGFPEISFKDNECTFCAQCATICPE 80

Query: 464 QVLSATPQLNWNKAA 478
           + L    Q  W   A
Sbjct: 81  EKLFDLSQTPWQHQA 95



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 415 CQTSDCTLCMSCVAVCPTRALHLA---GDSPALRFIEQDCVQCGLCVKACPEQVLS 467
           C T     C SC   C  RA+      G +P  +     C  CG CV  CP Q +S
Sbjct: 101 CLTFQGIWCQSCKDACEPRAIGFTLSVGQAPMPKIDTSLCTGCGACVAPCPSQAIS 156



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 186 CERCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALP 237
           C+ C DAC   A+    S       +I+  LC G G C   CP++AI    P
Sbjct: 109 CQSCKDACEPRAIGFTLSVGQAPMPKIDTSLCTGCGACVAPCPSQAISIKQP 160



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 417 TSDCTLCMSCVAVCPTRALHL 437
           TS CT C +CVA CP++A+ +
Sbjct: 137 TSLCTGCGACVAPCPSQAISI 157



 Score = 24.6 bits (52), Expect = 0.003
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 7/35 (20%)

Query: 170 RLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSE 204
           ++D  LC        GC  CV  CP+ A+S +  E
Sbjct: 134 KIDTSLCT-------GCGACVAPCPSQAISIKQPE 161



 Score = 24.3 bits (51), Expect = 0.004
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 186 CERCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKF 245
           C  C+ AC    +     +     I      C     CAT CP E +      P   Q  
Sbjct: 39  CSACITACETKIIFK--GDGGFPEISFKDNECTFCAQCATICPEEKLFDLSQTPWQHQAV 96

Query: 246 IE 247
           I+
Sbjct: 97  IQ 98