Pairwise Alignments

Query, 951 a.a., formate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

Subject, 1428 a.a., formate dehydrogenase, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  259 bits (661), Expect = 1e-72
 Identities = 177/606 (29%), Positives = 293/606 (48%), Gaps = 75/606 (12%)

Query: 66   TICSHCSVGCGIYAEVQNGVWTGQ--EPAFDHPFNAGGHCAKGAALREHGHGERRLKYPM 123
            TIC++C VGC +  ++       +  E   D   N G  C KG    +  H ++RL  P+
Sbjct: 740  TICTYCGVGCRLDLKIDPSTNRIRHIEGNKDSVVNQGMLCVKGRFGFDFIHSDKRLTTPL 799

Query: 124  KLEGGKWKKISWEQAINEIGDKALKIREESGPDSVYFLGSAKHSNEQAYLFRKMA-SLWG 182
              + GK +  SW +AI+ +  +  +I+++ G ++   L SAK +NE  ++ +K   S+ G
Sbjct: 800  IRKNGKLQPCSWPEAIDYVAKRLTEIKQKDGSNAFASLASAKATNEDNFVLQKFVRSVLG 859

Query: 183  TNNVDHQARICHSTTVAGVANTWGYGAMTNSFNDMHNCKSMLFIGSNPAEAHPVAMQHIL 242
            TNN+DH AR+CHS+TV G+  + G GAMTN    + +   +  +GS+   AHP+    I 
Sbjct: 860  TNNIDHCARLCHSSTVTGLQQSIGSGAMTNDILSIKDSDVIFILGSDTTCAHPIIASKIQ 919

Query: 243  IAKEKNSCKIVVADPRRTRTAAKADYFVSLRPGSDVAFIWGVLWHVFKNNWEDKEYIRQR 302
             A      +++VADP+R   A KA+ +V+ RPG+DV  +  ++  + +NNW+DK+YI +R
Sbjct: 920  QAVNLYGARLIVADPKRVGIAEKAELYVAHRPGTDVMLLNAIMAEIIRNNWQDKDYIAKR 979

Query: 303  VFGMDEIRAEVAK--WTPAEVERVTGVSEEEVYNTAKTLAENRPGCVVWCMGGTQHTTGN 360
              G++ + AE+AK  ++  +   +TGV  E +   A+T+   +   V + MG TQHTTG+
Sbjct: 980  TEGIEALYAELAKEDYSLEKAALITGVKAENIARIARTIGTAQKTAVYYAMGITQHTTGH 1039

Query: 361  NNTRAYCILELALGNIGKSGGGANIFRGHDNVQGATDLGVLSDTLPGYYGLTE-GSWKHW 419
            +N  A   L+L  GNIG SG G N  RG  NVQGA D+G L +   GY  +T+  +   +
Sbjct: 1040 DNVTAISNLQLLCGNIGVSGAGINPLRGQSNVQGACDMGALPNYFTGYQKVTDIHARMRF 1099

Query: 420  ASVWGVDFEWIKNRFDQGTYNGALPMETPGIPVSRWIDGVLENKDNLQQRENIRAMFYWG 479
             S W            Q   +G +     G+  +  +  + + K        I A++  G
Sbjct: 1100 ESHW------------QTPLSGEI-----GVTATHMMHDIAKGK--------INALYVMG 1134

Query: 480  -HAVNSQTRGVEMKKAMQKLDMMVIVDPYPTVAAVMNDRTDGVYLLPATTQFETYGSVTA 538
             + V S      +  A+ +++ +V+ D + T  A +        +LPA    E  G  T 
Sbjct: 1135 ENPVLSDPDQAHVLNALSQIEFLVVQDIFLTETAEL-----AHVVLPAAAFVEKRGHFTN 1189

Query: 539  SNRSIQWRDQVIEPLFESKPDHEIMYLLSQKLGIADQLCKHIRVENNQPLIEDITREFNR 598
            + R +Q  +Q +    E+ PD +I+  ++  +G          +      I  +T ++  
Sbjct: 1190 TERRVQRLEQALASPGEALPDWQIVQAIANAMGANWDYKDEAAIWAE---INALTPQYRG 1246

Query: 599  GMW---TIGYTGQSPERLKTHQQNWHTFHKTTLAAEGGPAHGDTYGMPWPCWGTPEMKHP 655
             +W   T G  GQ P+                             G+ WPC   P+ KHP
Sbjct: 1247 ILWERLTAGEDGQIPQ-----------------------------GIQWPC---PDEKHP 1274

Query: 656  GTHILY 661
            GT I++
Sbjct: 1275 GTPIMH 1280



 Score = 65.5 bits (158), Expect = 2e-14
 Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 24/151 (15%)

Query: 800  PTLYKSIQAQDKSVEYPIILTSGRLVEYEGGGEETRSNPWLAELQQEMFVEVNPKDANDL 859
            P  Y+ + A+    EYP+ L++GRL+E    G  TR  P L +L     V ++  DA  L
Sbjct: 1293 PVSYR-LPAEMPCNEYPLTLSTGRLLEQFHTGTLTRKTPGL-DLLGAPKVMISVYDAEQL 1350

Query: 860  GFMDGDMVWVEGAEKGRIKVKAMVTRRVKPGMAFLPFHFGGKFQGEDLRPKYPEGTQPYV 919
            G  +GD + +    +G I++ A VT+R + G+ FLPFHF                     
Sbjct: 1351 GINNGDKIRLT-TRRGEIEIDAFVTKRAQAGVLFLPFHF--------------------- 1388

Query: 920  VGEAANTATTYGYDPVTLMQETKVTLCNIRK 950
            V  AAN  T    DPV  + E KV    + K
Sbjct: 1389 VEAAANKLTINALDPVAYIPEYKVCAVRVEK 1419