Pairwise Alignments

Query, 951 a.a., formate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

Subject, 1012 a.a., formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  229 bits (585), Expect = 5e-64
 Identities = 187/637 (29%), Positives = 291/637 (45%), Gaps = 112/637 (17%)

Query: 20  SRRAFMKNTSLAAGGAAVGASLFTPGMIRKAQASEVDRSAK-TEVKRTICSHCSVGCGIY 78
           +RR+F+K   ++  G ++G   F    +  AQA  V    +  +   T+C  CSV C + 
Sbjct: 4   TRRSFLKLVGVSVVGLSLGQLGFD---LEDAQAYAVKLKIEGAKEVGTVCPFCSVCCQVI 60

Query: 79  AEVQNGVWTGQEPAFDHPFNAGGHCAKGAALREHGHGERRLKYPMKL--EGGKWKKISWE 136
           A V+NG     E   D P N G  CAKGAAL        RL  P+       KW +  W+
Sbjct: 61  AYVRNGKLVSTEGDPDFPVNEGALCAKGAALFSMYTNPHRLTKPLYRAPHSDKWVEKDWD 120

Query: 137 QAINEIG-------DKALKIREESGP-----DSVYFLGSAKHSNEQAYLFRKMASLWGTN 184
             +N+I        DK + ++ + G      +S++ +G++  SNE+  +  +     G  
Sbjct: 121 WTLNQIARRVKDARDKDMILKNDKGQTVNRLESIFMMGTSHASNEECAVIHQAMRGLGVV 180

Query: 185 NVDHQARICHSTTVAGVANTWGYGAMTNSFNDMHNCKSMLFIGSNPAEAHPVAMQHILIA 244
           ++DHQAR+ HS TVA +A ++G GAMTN + D+ N  ++L IGSN AE HPVA + I+ A
Sbjct: 181 HMDHQARVUHSPTVAALAESFGRGAMTNHWIDIKNTDAVLIIGSNAAEHHPVAFKWIMRA 240

Query: 245 KEKNSCKIVVADPRRTRTAAKADYFVSLRPGSDVAFIWGVLWHVFKNNWEDKEYIRQR-- 302
           ++ N   ++  DP+ +RT+A+ D+ V LR G+D+AF+ G++ H+   +   K+Y+     
Sbjct: 241 RD-NGAVLMHVDPKFSRTSARCDFHVPLRSGTDIAFLGGMVNHIIAKDLYFKDYVANYTN 299

Query: 303 ---VFGMDEI--------------RAEVAKW----------------------------- 316
              V G D                  + +KW                             
Sbjct: 300 AAFVVGKDYAFEDGIFSGYDPKTRTYDRSKWEFEKGPDGGPVMDPTLKNERCVFNLMKKH 359

Query: 317 ----TPAEVERVTGVSEE---EVYNT-AKTLAENRPGCVVWCMGGTQHTTGNNNTRAYCI 368
               T   V  VTGVSEE    VY+    T   ++ G +++ +G TQHT G  N R   +
Sbjct: 360 YERYTLKNVSDVTGVSEENLLRVYDAFCATGRPDKAGTILYALGWTQHTVGVQNIRTSTL 419

Query: 369 LELALGNIGKSGGGANIFRGHDNVQGATDLGVLSDTLPGYYGLTEGSWKHWA-------- 420
           ++L LGNIG +GGG N  RG  NVQG+TD  +L   LPGY  +    W+  A        
Sbjct: 420 IQLLLGNIGVAGGGINALRGEPNVQGSTDHALLYHILPGYNAMPVAQWQTLADYNKANTP 479

Query: 421 -SVWGVDFEWIKNRFDQGTYNGALPMETPGIPVSRWIDGVLENKDNLQQRENIRAMF--- 476
            +       W  NR     Y  +L     G   +   D   E    L++ E+   M+   
Sbjct: 480 VTTLKNSANWWSNR---PKYVASLLKGWFGDAATPENDFCYEYLPKLEKGEDYSYMYVMD 536

Query: 477 --YWG----------HAVNSQTRGVEMKKAMQKLDMMVIVDPYPTVAAVMNDRTDG---- 520
             Y G          + +NS     +M+ A+ KLD +V  + + +     N +  G    
Sbjct: 537 RMYHGKLKGGFIFGVNPMNSFPNTNKMRAALDKLDWLVCSELHNS-ETTDNWKRPGVDPK 595

Query: 521 -----VYLLPATTQFETYGSVTASNRSIQWRDQVIEP 552
                V+LLP+  + E  G+++ S R +QW D+ +EP
Sbjct: 596 ACKTEVFLLPSAHRVEKAGTISNSGRWLQWFDKAVEP 632



 Score = 79.3 bits (194), Expect = 1e-18
 Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 33/193 (17%)

Query: 770  PLHREPLYTPRRDLLADYP---TWDDQAFIFRVPTLYKSIQAQDKSVEYPIILTSGRLVE 826
            P H EP  TP    L  +P         + F    + +  +A D   +YPI+LT+  L E
Sbjct: 835  PEHYEPAETP----LDSHPFSKQLSSPVYKFHTSDMDQIAKAADP--KYPIVLTTYSLTE 888

Query: 827  YEGGGEETRSNPWLAELQQEMFVEVNPKDANDLGFMDGDMVWVEGAEKGRIKVKAMVTRR 886
            +  GG ETR+ P L E + ++++E++P+ A + G  +GD V VE   +GR +  AMVT R
Sbjct: 889  HWCGGGETRNVPNLLETEPQLYIEMSPELAEEKGIKNGDGVIVESI-RGRAEAIAMVTVR 947

Query: 887  VKP--------GMAFLPFHFGGKFQGEDLRPKYPEGTQPYVVGEAANTATTYGYDPVTLM 938
            ++P         +  +PF +G         PK          G++ N  T   YDP T +
Sbjct: 948  IRPFTVMGKTVHLVGMPFAYGW------TTPK---------CGDSTNRLTVGAYDPNTTI 992

Query: 939  QETKVTLCNIRKA 951
             E+K  L N+RKA
Sbjct: 993  PESKACLVNVRKA 1005