Pairwise Alignments

Query, 951 a.a., formate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

Subject, 1003 a.a., formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  239 bits (611), Expect = 5e-67
 Identities = 194/672 (28%), Positives = 305/672 (45%), Gaps = 127/672 (18%)

Query: 21  RRAFMKNTSLAAGG---AAVGASLFTPGMIRKAQASEVDRSAKTEVKRTICSHCSVGCG- 76
           RR F+K  S +AG    A +G SL  P + R A+     + AK +V  ++C  C+VGCG 
Sbjct: 5   RRTFIKLASASAGALAFAGLGQSL-APTVARAAEL----KIAKAKVTPSVCCFCAVGCGL 59

Query: 77  -IYAEVQNGVWTGQEPAFDHPFNAGGHCAKGAALREHGHGERRLKYPMKLEGGK--WKKI 133
            +Y + Q G     E   DHP N G  C KGA++ +     +R+   +    G   W++ 
Sbjct: 60  LVYTDTQTGRSINIEGDPDHPTNEGTLCPKGASIWQTTERSKRVTKVLYRAPGAAAWEEK 119

Query: 134 SWEQA-------INEIGDKALKIREESGPD-----SVYFLGSAKHSNEQAYLFRKMASLW 181
           SW+ A       I E  D   ++  + G        +  +GSA   NE+ +L + M    
Sbjct: 120 SWDWALPRIARKIKETRDATFELTNDKGQTVNRTRGIASVGSAAVDNEEGWLMQAMMRAL 179

Query: 182 GTNNVDHQARICHSTTVAGVANTWGYGAMTNSFNDMHNCKSMLFIGSNPAEAHPVAMQHI 241
           G   ++  ARI HS+TV  +A ++G GAMTN + D+ N   +L +GSN AE HP++ + +
Sbjct: 180 GLVYIESHARIUHSSTVGALAESYGRGAMTNHWIDLKNSDVILIMGSNAAENHPISFKWV 239

Query: 242 LIAKEKNSCKIVVADPRRTRTAAKADYFVSLRPGSDVAFIWGVLWHVFKNNWEDKEYI-- 299
             A+E+ +  I V DPR TRT+AKAD    +R G+D+AF  G++ ++ +N+   ++Y+  
Sbjct: 240 TRAQERGATLIHV-DPRFTRTSAKADIHAHIRSGTDIAFFGGLIRYIMENDLFFRQYVVD 298

Query: 300 -------------------------------RQRVFGMDE-------------------I 309
                                          ++  F  DE                   +
Sbjct: 299 YTNASYIVGADYGFADGLFTGFDAEKGTYNTKKWAFAADENGMTLKDPTLNDPRCVFQLM 358

Query: 310 RAEVAKWTPAEVERVTGVSEEEVYNTAKTLAE----NRPGCVVWCMGGTQHTTGNNNTRA 365
           +A  A++    V  VTG+SEE++     T A     +R G +++ MG  QHT G  N RA
Sbjct: 359 KAHYARYDRKTVSDVTGISEEQLATLWSTFASTGKPDRAGTILYAMGQCQHTVGVQNIRA 418

Query: 366 YCILELALGNIGKSGGGANIFRGHDNVQGATDLGVLSDTLPGYYGLTEGSW----KHWAS 421
             +++L LGNIG +GGG N  RG  NVQG TD+ +L D L GY    + SW     +   
Sbjct: 419 LSMIQLLLGNIGIAGGGVNALRGESNVQGTTDISLLCDNLSGYLPTPKASWATFDDYVKG 478

Query: 422 VWGVDFE-----WIKNRFDQGTYNGALPMETPGIPVSRWIDGVLENKD------------ 464
              VD +     W  NR   G Y  +        P +   DG L +              
Sbjct: 479 TTPVDKDPKSANWWSNR---GKYLASYMKSV--YPTASHQDGYLWHPKVDDGKITDYSWL 533

Query: 465 ---NLQQRENIRAMFYWG-HAVNSQTRGVEMKKAMQKLDMMVIVDPYPTVAAVM------ 514
                  +   +  F WG +         + +KAM+ LD MV+V+ +   +++       
Sbjct: 534 QIFERMSKGGFKGAFVWGQNPCAGGANAGKNRKAMETLDWMVVVNLFENESSLFWKGPGV 593

Query: 515 ---NDRTDGVYLLPATTQFETYGSVTASNRSIQWRDQVIEPLFESKPDHEIMYLLSQKLG 571
                +T+ V+ LPA    E  GS+  S R +QWR+   +P+ +S+ D +I+      L 
Sbjct: 594 DPAKVKTE-VFFLPACMSVEKGGSIANSGRWLQWREPGPKPMGDSRSDGDIV------LD 646

Query: 572 IADQLCKHIRVE 583
           + D++ K  R E
Sbjct: 647 LYDEIRKLYREE 658



 Score = 73.2 bits (178), Expect = 8e-17
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 20/229 (8%)

Query: 727  AAEGKNWKTDLSGGIQRVAIKHGCIPFGNAKARAIVWTFPDRV----PLHREPLYTPRRD 782
            A  G+ W  D+  G  +   K   +PF   +        P RV    P H EP  +P   
Sbjct: 791  AWNGEKWVGDVPDGGWKPGEK---LPFIMIREGRGQLFGPGRVDGPFPEHYEPFESP--- 844

Query: 783  LLADYPTWDDQAFIFRVPTLYKSIQAQDKSVEYPIILTSGRLVEYEGGGEETRSNPWLAE 842
             L  +P    +     +   ++    +DK   YP I T+ R+ E    G  TR+  WL E
Sbjct: 845  -LESHPFSKQRVNPTALAFSHEPKAVRDK--RYPFICTTYRVTEQWQSGTMTRNTGWLKE 901

Query: 843  LQQEMFVEVNPKDANDLGFMDGDMVWVEGAEKGRIKVKAMVTRRVKPGMAFLPFHFGGKF 902
            +Q E F E++ + A +LG  +GD V +E   +G+++V A+VT R+K      PF   G+ 
Sbjct: 902  MQPEGFCEISRELAKELGIANGDAVVLESL-RGKVQVVAIVTPRLK------PFKVMGEV 954

Query: 903  QGEDLRPKYPEGTQPYVVGEAANTATTYGYDPVTLMQETKVTLCNIRKA 951
              E   P      Q    G++AN  +    DP T + ETKV + N+RKA
Sbjct: 955  MHEVGIPWQFGWGQHVGKGDSANLLSPSVGDPNTGIPETKVFMVNLRKA 1003