Pairwise Alignments

Query, 202 a.a., formate dehydrogenase iron-sulfur subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., 40.1 kd protein in hmc operon (HmcB) (voordouw) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 85.9 bits (211), Expect = 9e-22
 Identities = 59/207 (28%), Positives = 75/207 (36%), Gaps = 43/207 (20%)

Query: 7   LCDTKRCIECNGCVTAC--------------------KNENDDALEWGIQRRRVVTLNDG 46
           L DT RCI C  C  AC                    K    DA  W +  R      D 
Sbjct: 43  LHDTTRCIGCRKCEQACNEVNKLPAPKAKFDDLTVLEKTRRTDADSWTVVNRYNAAGLDH 102

Query: 47  EPGENSISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF 106
                     C HC +  C + C    F    DG V ++  LC+GC YC+ ACPF  P F
Sbjct: 103 PVFRKQ---QCNHCLEPACASACFVKAFTKNPDGSVTYDGSLCVGCRYCMVACPFNVPAF 159

Query: 107 PKQAAFGERGKMDKCTFCAGGPETEPGSEEERRKYGANRIAEGKLPMCASLCSTKALLAG 166
               AF     + KCT C                    R+AEGKLP C  +C  +AL  G
Sbjct: 160 QYAEAFDP--LIQKCTMC------------------HPRLAEGKLPGCVEICPKEALTFG 199

Query: 167 DAEKISDIFRQRVVERGAKGAGWTNGE 193
             + +  I   R+ +   +      GE
Sbjct: 200 RRKDLVRIAHDRIRQNPGRYIDHVYGE 226



 Score = 28.1 bits (61), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 82  VLHNKDLCIGCGYCLFAC------PFGAPQFPKQAAFGERGKMDKCTFCAGGPETEPGSE 135
           VLH+   CIGC  C  AC      P    +F       +  + D  ++         G +
Sbjct: 42  VLHDTTRCIGCRKCEQACNEVNKLPAPKAKFDDLTVLEKTRRTDADSWTVVNRYNAAGLD 101

Query: 136 EE-RRKYGANRIAEGKLPMCASLCSTKA 162
               RK   N   E   P CAS C  KA
Sbjct: 102 HPVFRKQQCNHCLE---PACASACFVKA 126