Pairwise Alignments

Query, 277 a.a., GntR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., RNA binding S1 from Pseudomonas syringae pv. syringae B728a

 Score =  276 bits (706), Expect = 4e-79
 Identities = 139/278 (50%), Positives = 189/278 (67%), Gaps = 3/278 (1%)

Query: 1   MINIGQINSLEVVKFAEFGVFLDAGEYGTTLLPKRFVPEGI--EIGQFIDVFLYFDSENQ 58
           M  IG+ NSL++VK   FG++LD  + G  LLP R++P+ +  E   +++VF+Y DSE++
Sbjct: 1   MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDK 60

Query: 59  LAATTETPIAQVGEWGLMKIEGVNSTGAFANWGIKNKDLLIPYSEQRARFTAGQTVLVYV 118
           L ATTE P  QVGE+  +K+  VNS G F +WG+  KDLL+PYSE++    AG   +V+V
Sbjct: 61  LLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLP-KDLLLPYSEEKRTLQAGDYCVVHV 119

Query: 119 YTDKASGRIVGTTKFNKWLDKTPAKYTPNQQVDLLIAERSELGFKAIVNGTHWGMIFSSD 178
           Y DK + RI  T + +++LDKTPA Y+  Q+VDLL+AE +++GFKAI+N  HWG+I  ++
Sbjct: 120 YLDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNE 179

Query: 179 VFGKLFIGKKLKGYIKSVREDGKIDLSLQKVGVEKMDELSTKILETLEKKGGFLPLSDKS 238
           VF  +  GK+ KGYIK +R DG I LSLQ VG E    L++KIL  L +  G LP+SDKS
Sbjct: 180 VFKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKS 239

Query: 239 TPEAIFATFRTSKGTFKKTIGGLYKQGKIVIENDGIRL 276
            P+ I   F  SKG FKK IG LYKQG+IVI  D I L
Sbjct: 240 DPQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIEL 277