Pairwise Alignments

Query, 277 a.a., GntR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  266 bits (681), Expect = 3e-76
 Identities = 132/276 (47%), Positives = 191/276 (69%), Gaps = 1/276 (0%)

Query: 1   MINIGQINSLEVVKFAEFGVFLDAGEYGTTLLPKRFVPEGIEIGQFIDVFLYFDSENQLA 60
           M+ IG+   LEVVK   FGV+L+A E+G  LLP +  P+  ++G +++VFLY DSE+ + 
Sbjct: 1   MVQIGKTCKLEVVKQVSFGVYLNAHEFGQVLLPNKATPKDCQVGDWLEVFLYLDSEDIVI 60

Query: 61  ATTETPIAQVGEWGLMKIEGVNSTGAFANWGIKNKDLLIPYSEQRARFTAGQTVLVYVYT 120
           ATT  P+AQVGE+  +K       GAF +WG+ +KDLL+P+ EQ      G++ LVYV+ 
Sbjct: 61  ATTRKPLAQVGEFAYLKAVATGPFGAFLDWGL-DKDLLLPFGEQHKPIEEGRSYLVYVHV 119

Query: 121 DKASGRIVGTTKFNKWLDKTPAKYTPNQQVDLLIAERSELGFKAIVNGTHWGMIFSSDVF 180
           ++A  RIV ++K +K+LDKTPA Y   QQVDL I   ++LG+KAI+N  HWG+I+ ++VF
Sbjct: 120 NRADERIVASSKIDKFLDKTPAHYEVGQQVDLFIGGTTDLGYKAIINHAHWGVIYQNEVF 179

Query: 181 GKLFIGKKLKGYIKSVREDGKIDLSLQKVGVEKMDELSTKILETLEKKGGFLPLSDKSTP 240
            KL  G++LKG+IK VR D KIDL LQ+   +++D+ +  IL  L++ GGFLPL+DK+  
Sbjct: 180 QKLRFGQRLKGFIKQVRRDSKIDLVLQQGSKQELDKNAHIILVKLKQAGGFLPLTDKTDA 239

Query: 241 EAIFATFRTSKGTFKKTIGGLYKQGKIVIENDGIRL 276
           E I+     SK  FKK+IGGL+K  K+ I++DG+RL
Sbjct: 240 EVIYEQLGMSKKAFKKSIGGLFKASKLSIDDDGLRL 275