Pairwise Alignments

Query, 277 a.a., GntR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  254 bits (648), Expect = 2e-72
 Identities = 122/276 (44%), Positives = 186/276 (67%), Gaps = 1/276 (0%)

Query: 2   INIGQINSLEVVKFAEFGVFLDAGEYGTTLLPKRFVPEGIEIGQFIDVFLYFDSENQLAA 61
           I +G+ N LEVVK  +FG++LD G+ G  LLP R+VPE  ++G  ++VFLY D + +L A
Sbjct: 3   IELGKFNQLEVVKEVDFGLYLDGGDEGEILLPTRYVPEDCKVGDMLNVFLYLDIDERLIA 62

Query: 62  TTETPIAQVGEWGLMKIEGVNSTGAFANWGIKNKDLLIPYSEQRARFTAGQTVLVYVYTD 121
           TT TP+ QVG++  +++  VN  GAF NWG+  KDL +P+SEQ+ +   G++ +V+ + D
Sbjct: 63  TTLTPLVQVGQFACLEVSWVNQFGAFLNWGLM-KDLFVPFSEQKMKMQVGRSYVVHAHVD 121

Query: 122 KASGRIVGTTKFNKWLDKTPAKYTPNQQVDLLIAERSELGFKAIVNGTHWGMIFSSDVFG 181
           + S RIV + K  ++L K    Y P  +VD+LI ++++LGFKAI++  + G+++ +++F 
Sbjct: 122 EESYRIVASAKVERYLSKDMPDYAPGAEVDILIWQKTDLGFKAIIDNKYSGLLYENEIFR 181

Query: 182 KLFIGKKLKGYIKSVREDGKIDLSLQKVGVEKMDELSTKILETLEKKGGFLPLSDKSTPE 241
            L  G ++K ++K VREDGK+DL LQK G EK+D+ S  +LE + + GG + L+DKS  E
Sbjct: 182 ALETGMQMKAFVKQVREDGKVDLILQKPGFEKVDDFSKTLLEYIREHGGRINLNDKSPAE 241

Query: 242 AIFATFRTSKGTFKKTIGGLYKQGKIVIENDGIRLA 277
            I+ TF  SK TFKK +G LYK+  I +   GI LA
Sbjct: 242 DIYDTFGVSKKTFKKGVGDLYKKRLISLHETGITLA 277



 Score = 26.6 bits (57), Expect = 6e-04
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 1   MINIGQINSLEVVKFAEFGVFLDAGEYGTTLLPKRFVPEGIEIGQFIDVFLYFDSEN 57
           ++ +GQ   LEV    +FG FL+ G      +P       +++G+   V  + D E+
Sbjct: 68  LVQVGQFACLEVSWVNQFGAFLNWGLMKDLFVPFSEQKMKMQVGRSYVVHAHVDEES 124