Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., ribosomal RNA small subunit methyltransferase RsmB from Pseudomonas stutzeri RCH2

 Score = 90.5 bits (223), Expect = 1e-22
 Identities = 70/274 (25%), Positives = 122/274 (44%), Gaps = 11/274 (4%)

Query: 70  IRVNTLKISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQE 129
           +RVN  ++S   +         +  P  + E+G  + A   +  L   AE   G   +Q+
Sbjct: 173 LRVNRRQVSRDGYLAELQGAGIEAHPCEFSEDGIRLAAPCDVHQLPGFAE---GRVSVQD 229

Query: 130 ASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHAN 189
            ++ +  S L +  A    VLD   APG KT  +         LVA +    R+  +  N
Sbjct: 230 EAAQLAASLLDL--APGQRVLDACCAPGGKTCHLLEREPQLAGLVALDLEPKRLLRVREN 287

Query: 190 IERCGIRNTALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSI 249
           +ER  ++   +++        W  + F  +L+DAPCS  G IR+ PD       + I  +
Sbjct: 288 LERLHLQAELVADDARATERWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAPL 347

Query: 250 ANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA 309
           A  Q  ++++ +  L+VGG L+Y+TC++   EN++V     +    A   +  G      
Sbjct: 348 AALQGEMLDALWPTLEVGGVLLYATCSVLPTENREVIAAFLERTPGARELDLAG------ 401

Query: 310 SLALTEEGFLHIFPQMYDCEGFFVAKIRKLASVP 343
              L +     + PQ    +GF+ AK+ K+A+ P
Sbjct: 402 GFGLPQMHGRQLLPQESGHDGFYYAKLIKIAAQP 435