Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) from Shewanella amazonensis SB2B

 Score =  454 bits (1169), Expect = e-132
 Identities = 235/467 (50%), Positives = 315/467 (67%), Gaps = 7/467 (1%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           + L + FI S+A+ +P    + DF+  C  PLR SIRVNTLKI+          + WQ  
Sbjct: 2   VQLNQKFINSIAQEMPPHLSMDDFVHYCGLPLRLSIRVNTLKITSDALRAILEPRGWQFE 61

Query: 95  PVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAA 154
           PVPWCE+GFW+   +   P GN  EH  GLFYIQEASSMMP  ALFM       +LD+A+
Sbjct: 62  PVPWCEDGFWVTVPDDCQP-GNLTEHYQGLFYIQEASSMMPPCALFMDKEPRQLLLDVAS 120

Query: 155 APGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPE 214
           APGSKTTQ+AALM NQG+++ANE+SASR K LHAN++R G+ N A++ FDG VFG  L E
Sbjct: 121 APGSKTTQLAALMHNQGLIIANEYSASRTKALHANLQRMGVANVAITQFDGRVFGAHLYE 180

Query: 215 RFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYST 274
             DA+ +DAPCSGEGT+RKDP ++KNW  + I++IA  Q+ LI+SAFQALK GG LVYST
Sbjct: 181 TLDAIQLDAPCSGEGTVRKDPLSLKNWCPDEIEAIAELQRDLIDSAFQALKPGGVLVYST 240

Query: 275 CTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFVA 334
           CTL+R EN+ VC  LK+ YGDAV FESL +LF+ A  ALTEEGFLHI+PQ+YD EGFFVA
Sbjct: 241 CTLNRRENEDVCHFLKERYGDAVVFESLNDLFKGADKALTEEGFLHIWPQIYDSEGFFVA 300

Query: 335 KIRKLASVPTPEVNKR-LGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWLRDNDVW 393
           +IRK ASV     + R + KFPF  A+ K+ + + + +  +LG+ LP DA +  RD + W
Sbjct: 301 RIRKTASVARNTDDPRFVSKFPFVAANRKELSALEEAM-LALGVSLPEDAVIVTRDGEFW 359

Query: 394 LFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSVELDTTQAREWF 453
           L P  L+ LL ++RF R+GI++AE  K G + +H+    L     +  + ++   A+++ 
Sbjct: 360 LMPAPLDGLLTKMRFQRIGIRLAETQKHGIKVRHEAVMAL---PCNQMLSIEPEAAKQYL 416

Query: 454 MGRDVRPEGQ-SGQGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRD 499
           MGRD+  +     QGE I+      +G+ K +GN++KN LPR+L RD
Sbjct: 417 MGRDIALDNAGKAQGEKILSLHGAPLGIAKHLGNKLKNSLPRDLCRD 463