Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) from Shewanella loihica PV-4

 Score =  490 bits (1262), Expect = e-143
 Identities = 249/471 (52%), Positives = 332/471 (70%), Gaps = 8/471 (1%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           + L + FI S+AK +PD   + +FI+ C +PLR SIRVNTLKI+ A+F      K WQ  
Sbjct: 2   VQLNQNFINSIAKDMPDHLSMDEFISYCAKPLRPSIRVNTLKITTADFITMMNAKGWQFE 61

Query: 95  PVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALF---MGNAHYDSVLD 151
           PVPWCE+GFW+  D+S V LGNT EH+ GLFYIQEASSM+P  ALF   + +A   ++LD
Sbjct: 62  PVPWCEDGFWVKVDDS-VQLGNTVEHIQGLFYIQEASSMLPPKALFPEPIEDATSLTLLD 120

Query: 152 MAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGW 211
           MA+APGSKTTQ+AA+M+NQG+LVANE+S+SRVKVLHAN++R G  N AL++FD  VFG +
Sbjct: 121 MASAPGSKTTQLAAMMNNQGLLVANEYSSSRVKVLHANVQRMGASNLALTHFDARVFGKY 180

Query: 212 LPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLV 271
           L E FDA+L+DAPC GEGT+RKDPDA+K+W    I++IA+ Q+ LIESAF ALK GG+LV
Sbjct: 181 LFESFDAILLDAPCGGEGTVRKDPDALKHWDESEIEAIASVQRDLIESAFLALKPGGSLV 240

Query: 272 YSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGF 331
           YSTCTL+R ENQ VC HLK TYGDAV FESL  LF  A  A T EGFLH++PQ++D EGF
Sbjct: 241 YSTCTLNRRENQDVCLHLKATYGDAVQFESLAGLFPGAEKASTSEGFLHVWPQIFDSEGF 300

Query: 332 FVAKIRKLASVP-TPEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWLRDN 390
           F+AK+ K+A+VP   E  ++   FPF     K +  +      S GI+L     +  RD+
Sbjct: 301 FIAKLTKIAAVPRNSEEPRKQKNFPFTPIDKKSRQALCDYFDTSFGIKLDGQGILMQRDD 360

Query: 391 DVWLFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSVELDTTQAR 450
           + WLFP  ++PL+G++RF R+G+K+A+A K G++ +H+    LA       + LD  QA 
Sbjct: 361 EFWLFPTNVDPLIGKIRFQRIGLKLADALKKGFKPRHEAVMALA--DRLRGIPLDEAQAI 418

Query: 451 EWFMGRDVR-PEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRDK 500
           ++ MGRD+     +  QGE ++ Y    +GL K +GN++KN LPR+LVRDK
Sbjct: 419 QYLMGRDIALTSKEKPQGERLVSYQGAHLGLVKHLGNKLKNSLPRDLVRDK 469