Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., NOL1/NOP2/sun family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  505 bits (1300), Expect = e-147
 Identities = 260/470 (55%), Positives = 341/470 (72%), Gaps = 5/470 (1%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           + L   FI ++++ LP    + +FIAAC RPLR+SIRVNTLKIS  +F +    K W   
Sbjct: 2   VQLNPNFINTISQELPAHLSMDEFIAACARPLRRSIRVNTLKISSEDFKRLMQPKGWTFE 61

Query: 95  PVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAA 154
           P+PWC++GFWI  DE    LGN  EH+ GLFYIQEASSM+P +ALF  NA +  VLD+AA
Sbjct: 62  PIPWCKDGFWISYDEE-EQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLAA 120

Query: 155 APGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPE 214
           APGSKTTQMAALM+NQG+LVANE+SASRVKVLHAN+ R G  + AL++FDG VFG +L E
Sbjct: 121 APGSKTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYE 180

Query: 215 RFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYST 274
            FDAVLIDAPC GEGT+RKD DA+K+WSL+ + +I+ TQKALIESAF ALK GG+LVYST
Sbjct: 181 SFDAVLIDAPCGGEGTVRKDVDALKSWSLDEVIAISETQKALIESAFLALKPGGSLVYST 240

Query: 275 CTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFVA 334
           CTL+R ENQ VC +L+QTYG+AV FESL  LF+ A  A T EGFLH++PQ+YD EGFFVA
Sbjct: 241 CTLNRHENQGVCEYLQQTYGNAVQFESLSQLFDGADKATTPEGFLHVWPQIYDSEGFFVA 300

Query: 335 KIRKLASVPTPEVNKRLGK-FPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWLRDNDVW 393
           K+ K  SVP  ++  +L K FPF +AS KQ   I       LGIELP D  + +RD++ W
Sbjct: 301 KLTKTRSVPRLQLEPKLQKNFPFTEASPKQAKAIQAYFADDLGIELP-DELIMVRDDEFW 359

Query: 394 LFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLASSSASHSVELDTTQAREWF 453
           LFP      +G++RF R+G+K+A+  K G++ +H+    LA++ A + +E++  QA+E+ 
Sbjct: 360 LFPREFTDFIGKMRFQRIGLKLADHSKHGFKVRHEAVIALANTQA-NIIEINDEQAKEYL 418

Query: 454 MGRDVRPE-GQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRDKNL 502
           MGRD+  +     QGE+I+ Y    +G+ K +GN++KN LPR+LV+DK L
Sbjct: 419 MGRDIALDTATKAQGEIIVCYGGAPLGMAKHLGNKLKNNLPRDLVKDKVL 468