Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., sun protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.7 bits (234), Expect = 5e-24
 Identities = 80/280 (28%), Positives = 129/280 (46%), Gaps = 22/280 (7%)

Query: 60  AACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAE 119
           AA  RP ++ +RVN LK+S  E  Q+ A +      V   ++   + +D +L    +  E
Sbjct: 145 AALNRPPKRFLRVNGLKVSRDELVQKLATEFVSTQVVDSVDSALEVTSDSALFRTNSFKE 204

Query: 120 HMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFS 179
              GLF  Q+A S    +AL         V+D  A  G KT  +AA M  +G L+A +  
Sbjct: 205 ---GLFEQQDAGSQRVAAALDAKPGM--RVIDACAGAGGKTLHIAAQMQGKGRLLAMDVE 259

Query: 180 ASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMK 239
             ++  L     R G  N       G      L    D VL+D PCSG G ++++PDA  
Sbjct: 260 QWKLDNLKERARRNGAHNIETRLIVGSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDAKW 319

Query: 240 NWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSF 299
             + + +  +   QK ++ S  + +KVGG +VY+TC++   EN+          G   +F
Sbjct: 320 RDTADRLPVLMELQKHILSSYSRMVKVGGIVVYATCSIFPCENR----------GQVDAF 369

Query: 300 ESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFVAKIRKL 339
                L E+ +  L E+    I P     +GF++AK+ ++
Sbjct: 370 -----LAENPNFRLLEDE--TISPADTGFDGFYLAKLERI 402