Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., NOL1/NOP2/sun family putative RNA methylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 30/204 (14%)

Query: 151 DMAAAPGSKTTQMAALMDN---------QGVLVANEFSASRVKVLHANIERCGIRNTALS 201
           D  +  G KT Q+ +LM           QG +V+++  A+ ++ L    +R        +
Sbjct: 295 DACSGAGGKTLQLRSLMQTAATKQHTPLQGSIVSSDIRANALEELSKRAQR--------A 346

Query: 202 NFDGCVFGGWLPER-------FDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQK 254
            FDG     W  +        FD VL+DAPCS  GT R++PD     +L+++   A  Q 
Sbjct: 347 QFDGISIARWRSDALPVAANYFDGVLVDAPCSCTGTWRRNPDMRWLDTLDAVMDKATLQL 406

Query: 255 ALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALT 314
            ++  + QA+K GGTL+Y+TC+LS  EN++V     Q + +     +L  +    +   T
Sbjct: 407 DILSRSSQAVKAGGTLIYATCSLSPVENEEVVSAFLQQHPEF----NLVPIRHPFTGEQT 462

Query: 315 EEGFLHIFPQMYDCEGFFVAKIRK 338
           E   L ++P   + +G FVA++++
Sbjct: 463 E--MLTVWPFEANTDGMFVARMQR 484