Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., rRNA cytosine-C5-methyltransferase from Phocaeicola vulgatus CL09T03C04

 Score =  155 bits (393), Expect = 2e-42
 Identities = 139/481 (28%), Positives = 209/481 (43%), Gaps = 42/481 (8%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           + LP  F A   + + + T  A   AA Q     SIRVN  K S     + A E      
Sbjct: 1   MKLPSEFEARTLEWMGEETYRA-LEAALQTEPPVSIRVNRTKWSG----EVAGE------ 49

Query: 95  PVPWCENGFWIDADESLV--PLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDM 152
           PV W   G ++    +    PL +     AG +Y+QEASSM     L         +LD+
Sbjct: 50  PVLWASAGVYLSQRPTFTFDPLFH-----AGCYYVQEASSMFVEQVLRTYITGPVVMLDL 104

Query: 153 AAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWL 212
            AAPG K+T   +++    +LVANE   +R +VL  N+ + G     ++N D   F   L
Sbjct: 105 CAAPGGKSTHARSVLPVGSLLVANEVMRNRSQVLAENLIKWGNAEVVVTNNDPADFTS-L 163

Query: 213 PERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVY 272
            E FD VL D PCSGEG  RKDP A++ WS +++Q     Q+ ++   + ALK GG L+Y
Sbjct: 164 TEVFDVVLADVPCSGEGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIY 223

Query: 273 STCTLSREENQQ-VCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGF 331
           STCT +REE+++ V W   +   + +            +LA  +       P     EGF
Sbjct: 224 STCTYNREEDEENVAWIADELGAEILKVPVASEWGIIGNLAGQDFPVYRFLPHRVKGEGF 283

Query: 332 FVAKIRKLASVP--TPEVNKRLGKFPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWL-- 387
           F+A +RK A++    P +  +  K    K   K +     Q+     +  P + + WL  
Sbjct: 284 FLAVLRKSAAISHVVPCIRCQDDKEKITKKKRKGEKGSLSQV-----VPFPKEVKSWLKQ 338

Query: 388 --------RDNDVWLFPEA----LEPLLGELRFSRMGIKIAEAHKSGYRWQHQVA-TCLA 434
                   R   V  FP       +    EL+    G+ I E         H +A + L 
Sbjct: 339 AEDFRFEVRGTKVIAFPNVHLSEYDLFRQELKVVHAGVTIGELKGKDVIPDHSLAMSTLL 398

Query: 435 SSSASHSVELDTTQAREWFMGRDVRPEGQSGQGEVIIRYANDVIGLGKWVGNRVKNGLPR 494
           +       EL   QA  +     +  +    +G +++ Y N  +G  K +GNR  N  P+
Sbjct: 399 NHDGFSRFELTYEQAIAYLRKEAITLDASVPRGYILLTYKNIPLGFAKNIGNRANNLYPQ 458

Query: 495 E 495
           E
Sbjct: 459 E 459