Pairwise Alignments

Query, 503 a.a., 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) from Shewanella sp. ANA-3

 Score =  505 bits (1300), Expect = e-147
 Identities = 265/478 (55%), Positives = 339/478 (70%), Gaps = 13/478 (2%)

Query: 35  ISLPEPFIASMAKILPDPTQLADFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLT 94
           + L + FI ++A+ LP    + DFIAAC RPLR+SIRVNTLK S  +F +    K W   
Sbjct: 30  VQLNQNFINTIAQELPAHLSMDDFIAACSRPLRRSIRVNTLKTSSEDFKRLMQPKGWTFE 89

Query: 95  PVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAA 154
           P+PWCE+GFWI  DE    LGN  EH+ GLFYIQEASSM+P +ALF  NA +  VLD+A+
Sbjct: 90  PIPWCEDGFWISYDEE-EQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLAS 148

Query: 155 APGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPE 214
           APGSKTTQMAALM+NQG+LVANE+SASRVKVLHAN+ R G  + AL++FDG VFG +L E
Sbjct: 149 APGSKTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYE 208

Query: 215 RFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYST 274
            FDAVLIDAPC GEGT+RKD DA+K+WSL+ +  I+ TQKALIESAF ALK GG+LVYST
Sbjct: 209 SFDAVLIDAPCGGEGTVRKDADALKSWSLDEVIEISETQKALIESAFLALKPGGSLVYST 268

Query: 275 CTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHASLALTEEGFLHIFPQMYDCEGFFVA 334
           CTL+R ENQ VC +L+QTYGDAV FESL  LF+ A  A T EGFLH++PQ+YD EGFFVA
Sbjct: 269 CTLNRHENQGVCEYLQQTYGDAVQFESLSQLFDGAEKATTPEGFLHVWPQIYDSEGFFVA 328

Query: 335 KIRKLASVPTPEVNKRLGK-FPFNKASHKQQAEIAQQLHKSLGIELPSDAQVWLRDNDVW 393
           K+ K  SVP  +   +L K FPF +AS KQ   I       LGIELP D  + +RD++ W
Sbjct: 329 KLTKTRSVPRLQPEPKLQKNFPFTEASAKQAKAIQAYFADDLGIELPDDL-IMVRDDEFW 387

Query: 394 LFPEALEPLLGELRFSRMGIKIAEAHKSGYRWQHQVATCLA-------SSSASHSVELDT 446
           LFP      +G++RF R+G+K+A+  K G++ +H+    LA       + + +  VE+  
Sbjct: 388 LFPHEFRDFIGKMRFQRIGVKLADHSKHGFKVRHEAIIALAGKALKAGAKNGAKVVEVSD 447

Query: 447 TQAREWFMGRDVRPEGQSG--QGEVIIRYANDVIGLGKWVGNRVKNGLPRELVRDKNL 502
            QA+E+ MGRD+ P   +G  QGEVI+ Y    +G+ K +GN++KN LPR+LV+DK L
Sbjct: 448 EQAKEYLMGRDI-PLDTAGKAQGEVIVCYGGAPLGMAKHLGNKLKNSLPRDLVKDKVL 504