Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

 Score =  220 bits (561), Expect = 1e-61
 Identities = 159/557 (28%), Positives = 277/557 (49%), Gaps = 30/557 (5%)

Query: 58  PLMVDEVLLNHPAKGVEVMNQFLPQGWQTATGYIMLTLLMVVVMRIASQLLNILQSRQFT 117
           P++ D  +L H    ++  N     G     G  +L +L+ V   I S L N   ++   
Sbjct: 42  PMLAD--MLKHFLDALQKPNDTQFMGVSLVLGVPLLIVLIAVYQGIGSFLGNYYLAK--- 96

Query: 118 LVSKTITYEMRRKMIEKLGRISIRQYETRGSGGINAHLITDIETIDQFIGSTLSKFLISL 177
            V++ + +++R  + + L  +  R ++   SG + + +  ++  +       +   +   
Sbjct: 97  -VARGVVHDLRCALFDNLLTLPNRYFDNHNSGHLISRITYNVTMVTGAATDAIKVVIREG 155

Query: 178 LTVIGTAIVLLWLEWRLGLFILLVNPIVIYFSRMLGSQVKHLKKRENQAFERFQNRLVET 237
           LTV+     LL+  W++ L +L + P++         + +   K+   A     +   ET
Sbjct: 156 LTVVFLFGYLLYSNWKMTLVLLAILPVIAILVSSASKKFRKQSKKIQVAMGDVTHVASET 215

Query: 238 LDGIYQLRAANKEREFLNRLI-SDADAVRENADKYAWQSEAAGRLSFLLFLLGFELFRAV 296
           + G   +R+   E   + R   + AD +  +      QS     L  ++++       AV
Sbjct: 216 IQGYRVVRSFGGESYEIERFHKASADNMNRSLGMTRTQSIYTPMLQLVIYI-----GMAV 270

Query: 297 AMLMVVF--SDLTIGQIFAVFGYLWFMLSPVQEL----LGIQFSWYAAKAALKRINSLLE 350
            M +V++   D + G++ A       +  P+++L      IQ    AA +  ++++   E
Sbjct: 271 LMYLVLYLRGDASAGELVAYITAAGLLPKPIRQLSEVSATIQKGLAAADSIFEQLDEEPE 330

Query: 351 LEEEYRPISKVNPFTQLGEVDIEINNIHFSYDG-ESQVLNDLSLHIPAGKKVALVGASGG 409
           ++   + +++VN         +E+ N+ F Y G E  VL+D+S     G+ +ALVG SG 
Sbjct: 331 VDTGTKEMARVNG-------RLEVRNLSFQYPGTEKIVLDDISFTAEEGQMIALVGRSGS 383

Query: 410 GKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVIRDQIAVVLQQPILFNDTLRHNLTLG 469
           GKSTL  L+   Y    G I  +G   +      +R  IA+V QQ  LFND++ +N+  G
Sbjct: 384 GKSTLANLIPRFYHHDQGQILLDGVDVEQYKLTNLRRHIALVTQQVTLFNDSVTNNIAYG 443

Query: 470 GQFSD---DVLWQALDIAQLQDVITKLDQGLESQIGRNGIRLSGGQRQRLAIARMVLSNP 526
              +D   + + +A + A   + I ++ QG ++ +G NG+ LSGGQRQRLAIAR +L N 
Sbjct: 444 -DLADAPFESVRKAAEDAYAAEFIEQMPQGYDTLVGENGVLLSGGQRQRLAIARALLKNA 502

Query: 527 KFVILDEATSALDTATEAALHLALSKFLHGRTTLIVAHRLSAVKQADLIYVLEDGHVSQS 586
             +ILDEATSALDT +E  +  AL + + GRTTL++AHRLS +++ADLI +++ G + + 
Sbjct: 503 PLLILDEATSALDTESERHIQAALDQVIKGRTTLVIAHRLSTIEKADLILLMDKGRIVER 562

Query: 587 GTHHELLEQEGLYQTLY 603
           GTH ELL   G Y  L+
Sbjct: 563 GTHAELLALNGFYARLH 579