Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  220 bits (561), Expect = 2e-61
 Identities = 163/588 (27%), Positives = 294/588 (50%), Gaps = 31/588 (5%)

Query: 23  SWLITQVKKHRAKLLFANFIAVVATLISVPIPLLMPLMVDEVLLNHPAKGVEVMNQFLPQ 82
           SW    ++++R +L+     ++V  L ++  PL++  ++D+V+       +  +N F   
Sbjct: 430 SWFWPSIQRYRVRLIEVLIASLVVQLFTLANPLIIQQVIDKVI---GQGSLNNLNSFA-- 484

Query: 83  GWQTATGYIMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQ 142
                        +++V++ +   LL+ L++  F   +  I  ++   +I++L ++ +R 
Sbjct: 485 -------------VLLVILGVFQGLLSSLRTYLFADTTNRIDLKLGSDIIDRLLKLPLRY 531

Query: 143 YETRGSGGINAHLITDIETIDQFI-GSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLV 201
           +E R  G +++  + ++E I  F+ G+ L+  + ++ +VI   ++L++  W L L  L  
Sbjct: 532 FERRPVGELSSR-VQELEKIRSFLTGTALTTVMDAMFSVIYILVMLVY-SWFLTLVALST 589

Query: 202 NPIVIYFSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKER----EFLNRL 257
            PI +  +      V+   + + +     Q++LVE L GI  ++A N E     ++  R 
Sbjct: 590 VPIFVAITFFASPVVRRQLREKAERNAETQSQLVEVLSGIQTVKAQNIELKARWQWQERY 649

Query: 258 ISDADAVRENADKYAWQSEAAGRLSFLLFLLGFELFRAVAMLMVVFSDLTIGQIFAVFGY 317
                A   N +     S AA  L+     L   L   V + +V  + L++GQ+ A    
Sbjct: 650 ARYIAAGFRNINT----STAASSLTNFFNQLSGLLVLWVGVYLVFDNQLSLGQLIAFRII 705

Query: 318 LWFMLSPVQELLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFTQLGEVDIEINNI 377
             ++  P+  L  +  ++     +L+R+  +++  +E     +      +    +E  N+
Sbjct: 706 SGYVTQPLLRLAQLWQNFQETALSLERLADIVDTPQESDDDDQGKIPMPMINGKVEFRNL 765

Query: 378 HFSYDGESQV-LNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAIRFNGQHC 436
            F +  +  + L++++L IPAG+ V +VG SG GKSTL++LL  +Y    G I  +G   
Sbjct: 766 SFRFGEQGPLQLSNVTLEIPAGEYVGIVGQSGSGKSTLMKLLPRLYSPLEGEILIDGYDI 825

Query: 437 DDISFDVIRDQIAVVLQQPILFNDTLRHNLTLGG-QFSDDVLWQALDIAQLQDVITKLDQ 495
             +    +R QI +V Q  +LF  T+  N++L     + D +  A   A   D I  L  
Sbjct: 826 SKVELYSLRRQIGIVPQDSLLFQGTVEENISLTKPNATTDEIITAAKAAGAHDFIMTLPL 885

Query: 496 GLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSKFLH 555
           G  +++G  G  LSGGQRQR+AIAR VL NP+ +ILDEATSALD  TE  + + L +   
Sbjct: 886 GYNTRVGERGGALSGGQRQRIAIARTVLQNPQLLILDEATSALDYDTERQVSINLQQHFR 945

Query: 556 GRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
           G+T   + HRLS V+ AD I V++ G + + G+H EL+E  G Y  LY
Sbjct: 946 GKTVFFITHRLSTVRHADRIIVMDKGAMVEQGSHDELMELRGRYFCLY 993