Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., ABC transporter, ATP-binding protein MsbA (RefSeq) from Shewanella amazonensis SB2B

 Score =  235 bits (599), Expect = 5e-66
 Identities = 159/535 (29%), Positives = 265/535 (49%), Gaps = 13/535 (2%)

Query: 76  MNQFLPQGWQTATGYIMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKL 135
           +N     G+ +    +     +VV +     L N + +   + +S  +  +MR+++ E  
Sbjct: 65  VNMGTTSGFDSGNSVLFWAPFVVVGLFTLRGLANFVSTYGISYMSAKLIMDMRQQVFEHY 124

Query: 136 GRISIRQYETRGSGGINAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLG 195
             + +   +   SG + + +  D E I +  GS L   +   +TVIG   ++ +  W+L 
Sbjct: 125 LTLPVSYIDKENSGNLISRVTFDTEQIARASGSALISIVRDGVTVIGMLGLMFYNSWKLS 184

Query: 196 LFILLVNPIVIYFSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKEREFLN 255
           L IL+V PI+      +  + + + ++   A         + + G   + A   +     
Sbjct: 185 LCILIVGPIIGLVIATVSRRFRKISRQIQSAMGGVTAVTEQMIKGHKNVLAFGGQETEAK 244

Query: 256 RLISDADAVRENADKYAWQSEAAGRLSFLL---FLLGFELFRAVAMLMVVFSDLTIGQIF 312
           R     D  R    K A  ++A  + + ++   F L F L+   A    + S+LT G   
Sbjct: 245 RFAQVNDHNRHQNMKLA-VAQAISQPTIMIIGSFALAFVLY--AASFDALKSELTAGTFA 301

Query: 313 AVFGYLWFMLSPVQELLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFTQLGEVDI 372
            V   +   L P++ L  +   +    AA   +  LL+   E+    K    T+  +  +
Sbjct: 302 TVLAAMMATLQPIKNLTRVNAEFQRGIAACTTVFELLDTPAEH---DKGTFETERVKGHV 358

Query: 373 EINNIHFSYDG-ESQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRA-QSGAIR 430
               + F Y+G E + L+ +S  +P GK +ALVG SG GKST+  L+   Y   + GAI 
Sbjct: 359 RFEQVAFRYEGQEGRALDGISFDVPPGKTLALVGRSGSGKSTIASLINRFYGGLEQGAIE 418

Query: 431 FNGQHCDDISFDVIRDQIAVVLQQPILFNDTLRHNLTLGGQFS--DDVLWQALDIAQLQD 488
            +G + +D     +R Q+A+V QQ  LFNDT+ +N+     ++   + + QA  +A   +
Sbjct: 419 LDGVNVEDYRLKNLRSQVALVSQQVTLFNDTIANNIAYACPWAVTREQIEQAATLAHAME 478

Query: 489 VITKLDQGLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHL 548
            I+KL  GL++Q+G NG+ LSGGQRQR+AIAR +L N   +ILDEATSALDT +E A+  
Sbjct: 479 FISKLPSGLDTQVGENGVLLSGGQRQRIAIARAMLRNAPVLILDEATSALDTESEKAIQE 538

Query: 549 ALSKFLHGRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
            L      RT++++AHRLS ++ AD I V+E G + + G H  LL Q+G+Y  LY
Sbjct: 539 GLENLRQNRTSIVIAHRLSTIESADEILVIEQGRIVERGNHKSLLAQDGMYAKLY 593