Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., putative lipid A export ATP-binding/permease protein MsbA from Phaeobacter inhibens DSM 17395

 Score =  238 bits (607), Expect = 6e-67
 Identities = 165/532 (31%), Positives = 275/532 (51%), Gaps = 26/532 (4%)

Query: 83  GWQTATGYIMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQ 142
           G  TA  ++ L  L++  MR    L ++ Q    + +S+T    MR+ M+ +L R     
Sbjct: 110 GNTTALFWVSLAFLIIFSMR---GLSSVCQKVILSKISQTSAAHMRKDMLARLIRQDPSF 166

Query: 143 YETRGSGGINAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVN 202
           ++    G +   + +D+  I+    + ++     +  ++    V + ++WR    +L+  
Sbjct: 167 HQVNPPGFLIQRVQSDVMAINSVWQALITGAGRDVTQMVAVLAVAISVDWRWTAIMLIGL 226

Query: 203 PIVIYFSRMLGSQVKHLKKRENQAFE---RFQNRLVETLDGIYQLRAANKEREFLNRLIS 259
           P+++     L +  ++++++ +QA +       RL E   GI  ++  N E    +R   
Sbjct: 227 PMLLL---PLAAVQRYVRRKASQARDLGASLSTRLDEIFHGIVPIKLNNLEDYQTDRFGG 283

Query: 260 DADA-VRENADKYAWQSEAAGRLSFL--LFLLGFELFRAVAMLMVVFSDLTIGQIFAVFG 316
             D  VR         +   G +  +  L ++G  L+       ++    T+G+  + F 
Sbjct: 284 HMDQFVRSEVRASFGVASTTGMIDIMAGLGVMGVVLYGGAE---IIEGKKTVGEFMSFFT 340

Query: 317 YLWFMLSPVQELLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFTQL----GEVDI 372
            +     P++ L  I  +W AA AA++RI  L++      PI  V+P   +    G  ++
Sbjct: 341 AIGLAFDPMRRLASISGTWQAAAAAMERIKELMD-----SPIKLVSPENPVAPPKGLPEV 395

Query: 373 EINNIHFSYDGESQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAIRFN 432
            ++++   Y G+S VL +LSL   AGK  ALVGASG GKST+  LL  +   Q G++   
Sbjct: 396 ALSDVTLRY-GDSDVLRELSLVAEAGKTTALVGASGAGKSTIFNLLTRLVDPQEGSVTVG 454

Query: 433 GQHCDDISFDVIRDQIAVVLQQPILFNDTLRHNLTLGG-QFSDDVLWQALDIAQLQDVIT 491
           G    D+  D +R   +VV Q+ +LF++TLR N+ LG    S++ L + L+ + + D + 
Sbjct: 455 GVAVRDLDLDDLRGLFSVVTQEALLFDETLRENILLGRTDVSEERLQEVLEASHVADFLP 514

Query: 492 KLDQGLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALS 551
           KL  GL++ +G  G  LSGGQRQR+ IAR +L +   ++LDEATSALD  +E  +  AL 
Sbjct: 515 KLANGLDTLVGPRGSALSGGQRQRVVIARALLRDTPILLLDEATSALDAQSEKVVQQALE 574

Query: 552 KFLHGRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
           K   GRTTL++AHRLS ++ AD I V+E G V   GTH ELLE+ G+Y  LY
Sbjct: 575 KLSGGRTTLVIAHRLSTIRNADKIVVMERGQVMDHGTHEELLERGGIYADLY 626