Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., lipid A export ATP-binding/permease protein MsbA from Phaeobacter inhibens DSM 17395

 Score =  220 bits (561), Expect = 1e-61
 Identities = 159/574 (27%), Positives = 286/574 (49%), Gaps = 38/574 (6%)

Query: 42  IAVVATLISVPIPLLMPLMVDEVLLNHPAKGVEVMNQFLPQGWQTATGYIMLTLLMVVVM 101
           +A +A +++  + L +PL V  V+ N       ++NQ           Y    L++  ++
Sbjct: 39  MATLALVLTAGLSLTLPLAVRRVVDNFRISEAALLNQ-----------YFAAALVIAALL 87

Query: 102 RIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRGSGGINAHLITDIET 161
            + + L   L +R    + + +  ++R+ + +++  +S   +E   +G + + + TD   
Sbjct: 88  AVGTGLRYALVTR----LGERVVADIRKAVFDRVIGMSPAFFEQIMTGEVLSRITTDTTL 143

Query: 162 IDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVNPIVIYFSRMLGSQVKHLKK 221
           I   +GS++S  L ++L  IG  +++L    +L   +LL+ P VI    +LG +++ + +
Sbjct: 144 IQSVLGSSVSIALRNMLIFIGGLVLMLLTSAKLTSLVLLIVPAVIVPILVLGRRLRKISR 203

Query: 222 RENQAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDADAVRENADKYAWQSEAAGRL 281
                         E L  +  ++A      + + + S ++  R     +          
Sbjct: 204 ENQDWIAASSGNAGEALGAVQTVQA------YTHEVASRSEFSRLTETAFDVSMRRIQTR 257

Query: 282 SFLLFLLGFELFRAVAMLMVVFSD------LTIGQIFAVFGYLWFMLSPVQELLGIQFSW 335
           +FL  ++ F +F  V  ++ + ++      ++ G +     Y   +   V  L  I    
Sbjct: 258 AFLTVIVIFLVFSGVVGVLWMGANDVRAGIMSEGTLVQFVIYAVLVAGSVAALSEIWSEL 317

Query: 336 YAAKAALKRINSLL----ELEEEYRPISKVNPFTQLGEVDIEINNIHFSYDGESQV--LN 389
             A  A +R+  LL    ++++ Y P +   P       +I  +++ F Y    Q+  L 
Sbjct: 318 QRAAGATERLVELLTAVDQVQDPYAPRALAAPVRG----EIRFDDVSFRYPARPQIPALV 373

Query: 390 DLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVIRDQIA 449
           D+SL +  G+ VA VG SG GK+T+IQ++   Y   SGA+  +G+   D+  D  R  IA
Sbjct: 374 DVSLTVQPGETVAFVGPSGAGKTTIIQMIQRFYDPTSGAVCLDGRPLRDLQRDDFRQHIA 433

Query: 450 VVLQQPILFNDTLRHNLTLGGQFSDDV-LWQALDIAQLQDVITKLDQGLESQIGRNGIRL 508
           +V Q P++F  + R N+  G   + D  +  A   A   D I+ L +G +SQ+G  G+ L
Sbjct: 434 LVPQDPVIFALSARDNIRFGRPGASDAEVEAAARAAAAHDFISALPEGYDSQVGERGVML 493

Query: 509 SGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSKFLHGRTTLIVAHRLSA 568
           SGGQ+QR+AIAR +L +   ++LDEATSALD  +E  +  A+ +   GRTTLIVAHRL+ 
Sbjct: 494 SGGQKQRIAIARAILRDAPVLLLDEATSALDAESERLVQAAVDELSQGRTTLIVAHRLAT 553

Query: 569 VKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTL 602
           VK+AD I V+E+G +  +GTH +L+ ++GLY  L
Sbjct: 554 VKKADRIVVMEEGRIIATGTHDQLVAEDGLYARL 587