Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

 Score =  224 bits (571), Expect = 8e-63
 Identities = 150/535 (28%), Positives = 261/535 (48%), Gaps = 7/535 (1%)

Query: 73  VEVMNQFLPQGWQTATGYIMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMI 132
           VE ++  +  G+ + +  +     +V+ +     L N L +   + +S  +  +MR+++ 
Sbjct: 67  VEGVDLGMGGGFNSDSDVLKTAPFVVIGLFTLRGLANFLSTYGISYISARMIMDMRQQVF 126

Query: 133 EKLGRISIRQYETRGSGGINAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEW 192
           E   R+ +   +   SG + + +  D E I +  GS L   +   +TVIG   V+ +  W
Sbjct: 127 EHYLRLPVSYIDAESSGNLISRVTFDTEQIARASGSALITIVRDGITVIGMLGVMFYNSW 186

Query: 193 RLGLFILLVNPIVIYFSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKERE 252
           +L L IL+V P++     ++  + + + K+   A     +   + + G   +     ++ 
Sbjct: 187 KLSLCILIVGPLIGLVIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVLVFGGQQA 246

Query: 253 FLNRLISDADAVRENADKYAWQSEAAGRLSFLLFLLGFELFRAVAMLMVVFSDLTIGQIF 312
              R     D  R    K A     +  L  ++  L        + L  + +DLT G   
Sbjct: 247 ESQRFAKVNDDNRSRTMKLALAQAISQPLVMVIGSLALAFVLYASSLESMRADLTAGTFA 306

Query: 313 AVFGYLWFMLSPVQELLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFTQLGEVDI 372
            +   +  ML P++ L  +   +    AA   I ++L+   E   +      T+  E  +
Sbjct: 307 TILAAMLAMLQPIKSLTRVNAEFQRGIAACSTIFAVLDTPAE---VDNGTFETKRVEGRL 363

Query: 373 EINNIHFSYDG-ESQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYR-AQSGAIR 430
             + ++F Y+  E   L ++   +  G+ +ALVG SG GKST+  L+   Y    SG IR
Sbjct: 364 SFDKVNFRYNNQEGLALKEVDFQVNPGETLALVGRSGSGKSTIASLITRFYSDLDSGDIR 423

Query: 431 FNGQHCDDISFDVIRDQIAVVLQQPILFNDTLRHNLTLG--GQFSDDVLWQALDIAQLQD 488
            +     D     +R Q+A+V QQ  L NDT+  N+     G+ +++ +  A  +A   +
Sbjct: 424 LDDVSLRDYKLAALRRQVALVSQQVTLINDTIAANIAYAYPGEVTEEQIIDAAKLANAWE 483

Query: 489 VITKLDQGLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHL 548
            I  + +G+ +Q+G NG+ LSGGQRQR+AIAR +L +   +ILDEATSALDT +E A+  
Sbjct: 484 FICNMPEGIYTQVGENGVMLSGGQRQRIAIARAILRDAPILILDEATSALDTESEKAIQT 543

Query: 549 ALSKFLHGRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
            L      RT++++AHRLS V+ A+ I V++ G V + GTH ELL ++G+Y  LY
Sbjct: 544 GLDNLRQNRTSIVIAHRLSTVENANQILVVDQGKVVERGTHSELLAKQGIYYNLY 598