Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ABC transporter, ATP-binding protein MsbA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  233 bits (595), Expect = 1e-65
 Identities = 155/529 (29%), Positives = 265/529 (50%), Gaps = 13/529 (2%)

Query: 82  QGWQTATGYIMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIR 141
           QG+      +++  ++V++M       N + +   + +S  +  +MR+++ E    + + 
Sbjct: 73  QGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYLSLPVS 132

Query: 142 QYETRGSGGINAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLV 201
             +   +G + + +  D E I +  GS L   +   +T+IG   ++ +  W+L L IL++
Sbjct: 133 YMDKENTGNLISKVTFDTEQIARASGSALISIVRDSVTIIGMLGLMFYNSWKLSLCILVI 192

Query: 202 NPIVIYFSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDA 261
            PI+     ++  + + + K+   A         + + G   + A   +     R     
Sbjct: 193 GPIMGVVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGGQETETARFAKIN 252

Query: 262 DAVRENADKYAWQSEAAGRLSFLL--FLLGFELFRAVAMLMVVFSDLTIGQIFAVFGYLW 319
           D  R    K A     +  L  ++  F L F L+   A L  + +DLT G    + G + 
Sbjct: 253 DRNRHQNMKLAVAQAVSQPLIMVIGSFALAFVLY--AASLDSMKADLTAGTFATILGAMM 310

Query: 320 FMLSPVQELLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFTQL-GEVDIEINNIH 378
            ML P++ L  +   +    AA   +  LL+   E    S    +T    + ++  +N+ 
Sbjct: 311 AMLQPIKNLTRVNAEFQRGIAACTTVFELLDTVPE----SDTGTYTVARAKGNLRFDNVS 366

Query: 379 FSYDG-ESQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRA-QSGAIRFNGQHC 436
           FSY+G E + L  +   +  G+ +ALVG SG GKST+  L+   Y   +SG I  +    
Sbjct: 367 FSYEGQERRALEKIDFEVSQGQTLALVGRSGSGKSTIASLVTRFYTGLESGDILLDDVSI 426

Query: 437 DDISFDVIRDQIAVVLQQPILFNDTLRHNLTLG--GQFSDDVLWQALDIAQLQDVITKLD 494
            D S   +R Q+A+V QQ  LFNDT+ +N+     G+ + + + +A  +A   + I +L 
Sbjct: 427 YDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAMEFIEQLP 486

Query: 495 QGLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSKFL 554
            GL++Q+G NG+ LSGGQRQR+AIAR +L +   +ILDEATSALDT +E A+   L    
Sbjct: 487 DGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLR 546

Query: 555 HGRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
             RT++++AHRLS ++ AD I V++ G + + GTH  LLE  G+Y  LY
Sbjct: 547 QNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLY 595