Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  215 bits (548), Expect = 4e-60
 Identities = 167/578 (28%), Positives = 280/578 (48%), Gaps = 25/578 (4%)

Query: 31  KHRAKLLFANFIAVVATLISVPIPLLMPLMVDEVLLNHPAKGVEVMNQFLPQGWQTATGY 90
           +++ ++  A    +VA L SV +P ++  +VD +  N  A+ + V     P G   A G 
Sbjct: 28  EYKGRVALAMSCLIVAKLASVGLPFILKDVVDTLDANKTAQTLSV-----PIGLVLAYGA 82

Query: 91  IMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIRQYETRGSGG 150
           + L  L V+   I   L        F  V++     +   + + L R+ +  +  R +GG
Sbjct: 83  VRL--LTVITGEIRDTL--------FGRVTERAIRRLGLAVFDHLHRLDLDFHLERRTGG 132

Query: 151 INAHL---ITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLVNPIVIY 207
           ++  +    + +  + +F+   +   L+ +  VIG       + +    FI ++    I+
Sbjct: 133 LSRDIERGTSGVSFLMRFMVFNIVPTLLEIAMVIGIFFFNYGVAFASITFISVL--AYIW 190

Query: 208 FSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDADAVREN 267
           FS +         +   +A      R +++L     ++  N E+    R     D     
Sbjct: 191 FSVIATEWRTEYVRDAAKADSLSNTRAIDSLLNYETVKYFNNEKYESERYDQALDQWEVA 250

Query: 268 ADKYAWQSEAAGRLSFLLFLLGFELFRAVAMLMVVFSDLTIGQIFAVFGYLWFMLSPVQE 327
             K      A      L+  +      A+A   V  +++T+G    +  ++  +  P+  
Sbjct: 251 KRKNRLSLFALNGGQALIIAIAMTAMMALAAYKVTHNEMTLGDFVLINAFMMQLFMPLNF 310

Query: 328 LLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFT-QLGEVDIEINNIHFSYDGESQ 386
           L  +      A A ++R+ SLL+             F  + GE+  E  N+ FSYD +  
Sbjct: 311 LGFVYREIRGALANIERMFSLLDKHPSIVDKPDALDFEPKRGELSFE--NVSFSYD-DRP 367

Query: 387 VLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRAQSGAIRFNGQHCDDISFDVIRD 446
           +L ++S  + AGKKVA+VG SG GKSTLI+LL   Y  + G I  +GQ    ++ D +R 
Sbjct: 368 ILRNVSFKVAAGKKVAVVGDSGAGKSTLIKLLFRFYDVEQGRILIDGQDIRQLTQDALRR 427

Query: 447 QIAVVLQQPILFNDTLRHNLTLGG-QFSDDVLWQALDIAQLQDVITKLDQGLESQIGRNG 505
            IA+V Q  +LFND+L  N+  G    SDD +  A+ +A L+D I  L QG ++++G  G
Sbjct: 428 AIAIVPQDTVLFNDSLVENIRYGRPNASDDDVRHAIKLAHLEDFIASLSQGWDTKVGERG 487

Query: 506 IRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSKFLHGRTTLIVAHR 565
           ++LSGG++QR+AIAR +L     ++ DEATS+LD+ +E A+  AL +   G T+L+VAHR
Sbjct: 488 LKLSGGEKQRVAIARAILKGSPVLVFDEATSSLDSRSEQAILSALREVAKGHTSLVVAHR 547

Query: 566 LSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
           LS +  AD I VL  G + + G H  LL Q+GLY  L+
Sbjct: 548 LSTIVDADQIVVLSKGEIVEQGNHSSLLAQDGLYAKLW 585