Pairwise Alignments

Query, 610 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella sp. ANA-3

 Score =  239 bits (610), Expect = 2e-67
 Identities = 158/529 (29%), Positives = 270/529 (51%), Gaps = 13/529 (2%)

Query: 82  QGWQTATGYIMLTLLMVVVMRIASQLLNILQSRQFTLVSKTITYEMRRKMIEKLGRISIR 141
           QG+      +++  ++V++M       N + +   + +S  +  +MR+++ E    + + 
Sbjct: 72  QGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYLSLPVS 131

Query: 142 QYETRGSGGINAHLITDIETIDQFIGSTLSKFLISLLTVIGTAIVLLWLEWRLGLFILLV 201
             +   +G + + +  D E I +  GS L   +   +TVIG   ++ +  W+L L IL++
Sbjct: 132 YMDKENTGNLISKVTFDTEQIARASGSALISIVRDGVTVIGMLALMFYNSWKLSLCILVI 191

Query: 202 NPIVIYFSRMLGSQVKHLKKRENQAFERFQNRLVETLDGIYQLRAANKEREFLNRLISDA 261
            PI+     ++  + + + K+   A         + + G   + A   +     R     
Sbjct: 192 GPIMGLVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGGQETETARFAKVN 251

Query: 262 DAVRENADKYAWQSEAAGRLSFLL--FLLGFELFRAVAMLMVVFSDLTIGQIFAVFGYLW 319
           D  R    K A     +  L  ++  F L F L+   A L  + +DLT G    + G + 
Sbjct: 252 DRNRHQNMKLAVAQAISQPLIMVIGSFALAFVLY--AASLDSMKADLTAGTFATILGAMM 309

Query: 320 FMLSPVQELLGIQFSWYAAKAALKRINSLLELEEEYRPISKVNPFT-QLGEVDIEINNIH 378
            ML P++ L  +   +    AA   +  LL+      P S    +T +  + ++  +N+ 
Sbjct: 310 AMLQPIKNLTRVNAEFQRGIAACTTVFELLDT----LPESDTGTYTVKRAKGNLRFDNVS 365

Query: 379 FSYDG-ESQVLNDLSLHIPAGKKVALVGASGGGKSTLIQLLIGVYRA-QSGAIRFNGQHC 436
           FSYDG E + L+++   +  G+ +ALVG SG GKST+  L+   Y   +SG I  +    
Sbjct: 366 FSYDGQERRALDNIDFEVTQGQTLALVGRSGSGKSTIASLVTRFYTGLESGDILLDDVSI 425

Query: 437 DDISFDVIRDQIAVVLQQPILFNDTLRHNLTLG--GQFSDDVLWQALDIAQLQDVITKLD 494
            D S   +R+Q+A+V QQ  LFNDT+ +N+     G+ + + + QA  +A   + I +L 
Sbjct: 426 YDYSLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIQAATLAHAMEFIEQLP 485

Query: 495 QGLESQIGRNGIRLSGGQRQRLAIARMVLSNPKFVILDEATSALDTATEAALHLALSKFL 554
           +GL++Q+G NG+ LSGGQRQR+AIAR +L +   +ILDEATSALDT +E A+   L    
Sbjct: 486 EGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLR 545

Query: 555 HGRTTLIVAHRLSAVKQADLIYVLEDGHVSQSGTHHELLEQEGLYQTLY 603
             RT++++AHRLS ++ AD I V++ G + + GTH  LLE  G+Y  LY
Sbjct: 546 QNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLY 594