Pairwise Alignments

Query, 208 a.a., RNA chaperone ProQ from Vibrio cholerae E7946 ATCC 55056

Subject, 213 a.a., hypothetical Activator of ProP osmoprotectant transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  207 bits (528), Expect = 9e-59
 Identities = 113/213 (53%), Positives = 145/213 (68%), Gaps = 9/213 (4%)

Query: 1   MENTEKLKNSKEVIAYIAECFPNCFTLEGEAKPLKIGIFQDLADRLNDDPKVSKTQLRAA 60
           ME+T+KL ++  ++AY+ E FP CF  EGE KPLKIG+FQDLA+RL DD KVSKTQLR A
Sbjct: 1   MESTDKLTDTNAILAYLYETFPLCFIAEGETKPLKIGLFQDLAERLADDSKVSKTQLRVA 60

Query: 61  LRQYTSSWRYLHGVKPGATRVDLDGNPCGELEEQHVEHAQAALAESKARVEARRKEQVKK 120
           LR+YTSSWRYL  VK GA RVDLDG PCGELE++H++HAQA L ES+ + +A+R  Q  K
Sbjct: 61  LRRYTSSWRYLKSVKAGAQRVDLDGQPCGELEQEHIDHAQAMLKESQEKAKAKRAAQTPK 120

Query: 121 VREEAKANKPKAKK-----PQQARRP-QNAPKVEKKPVETRALA-ASELNVGNQVNVNMG 173
                KA   KA K      ++  RP + APKVE  PV     A  ++L    +VNV +G
Sbjct: 121 AAPAGKAPAKKAPKKVAVPARKTERPAKAAPKVE--PVVNLVQAQLTDLAKKQRVNVKLG 178

Query: 174 KGNMAATIVEVNKEDVRVQLANGLQMVVKAEHL 206
              +A  I ++NKED+ VQL +GL + VKAEH+
Sbjct: 179 MTPVAGVITDINKEDIHVQLDSGLTIKVKAEHI 211