Pairwise Alignments

Query, 665 a.a., tail-specific protease from Vibrio cholerae E7946 ATCC 55056

Subject, 682 a.a., carboxyl-terminal protease (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  763 bits (1971), Expect = 0.0
 Identities = 388/655 (59%), Positives = 497/655 (75%), Gaps = 11/655 (1%)

Query: 19  FSAQALEAKLKPEDLPLLVPEAQHATAAKRVTSRFTRSHYKQFNLDDQFSQAMFERYLEM 78
           FSA A+   ++  +LP L  EAQH  A+KRVT  +TRSHY +F LDD FS  +F+RYL+ 
Sbjct: 18  FSAWAVPPTIQISELPTLKQEAQHKVASKRVTDLYTRSHYHRFALDDAFSAQIFDRYLQQ 77

Query: 79  LDYSRNIFTQADIDSFKAWSLQLDDQLKAGDNQIAYDLYNLSMEKRFERFQYALSLLDQE 138
           LDY RN+ TQAD+DSFK +  Q DD L +G+   AY +++L  ++R+E F YALSLLD+E
Sbjct: 78  LDYRRNVLTQADVDSFKPYINQFDDMLSSGELDPAYKMFDLVQKRRYEGFVYALSLLDKE 137

Query: 139 MTFDADESI-ELDRTKSPWPKDLKEINELWRQRVKYDALSLKLAGKEWPEIKETLDKRYN 197
           M F A   + + DR    WPKD  EINELWRQRVKYDAL+LKL GK+W EI + L KRYN
Sbjct: 138 MDFTAPGDVYDYDREDVAWPKDQAEINELWRQRVKYDALNLKLTGKKWLEIVDILQKRYN 197

Query: 198 NAIKRLTQTKSEDVFQTYMNAFAREVDPHTSYLSPRNAEQFQSEMNLSLEGIGAVLQMTD 257
           NAIKRLTQT SEDVFQ  MNAF+R ++PHTSYLSPRNAE+FQ EMNLSLEGIGA LQ+ D
Sbjct: 198 NAIKRLTQTNSEDVFQAVMNAFSRSIEPHTSYLSPRNAERFQMEMNLSLEGIGAQLQLED 257

Query: 258 DYTIIRSLVAGGPAALSKQLGEGDRIIGVGQEGEDVVDVVGWRLDDVVQLIKGPKGSKVK 317
           DYT+I+SL+AGGPAA S++L   D+I+GVGQEG ++VDV+GWRLDDVV+LIKGPKGSKV 
Sbjct: 258 DYTVIKSLIAGGPAAGSEKLSPEDKIVGVGQEGGEIVDVIGWRLDDVVELIKGPKGSKVV 317

Query: 318 LLVLPE--GKDAKSHVVTIVRDKIRLEDRAVKSEVIEK-----AGKKIGVLEVPSFYVGL 370
           L +LP+  G +AK   VT+VRDKIRLEDRA  S++IE      A +K+GV+++P FY+ L
Sbjct: 318 LQILPKKGGSNAKPFNVTLVRDKIRLEDRAATSKIIEPKDGVYANRKVGVIQIPGFYMNL 377

Query: 371 AQDTEKLLAELKAKKVDGIIVDLRNNGGGALTEATALSGLFITSGPVVQVRDSYGRVNVN 430
           +QD EK L +L   KV+G+++DLR NGGGALTEA  L+GLFI  GPVVQVRD+ GRV+ +
Sbjct: 378 SQDVEKELLKLNEAKVEGVVIDLRGNGGGALTEAVLLTGLFIDMGPVVQVRDADGRVSAH 437

Query: 431 SDTDGSISYSGPMTVLINRYSASASEIFAAAMQDYGRAIILGENSFGKGTVQQHRSLNHI 490
            D DG  +Y+GP+TV+++RYSASASEIFAAA+QDY RA+I+GE+SFGKGTVQQH+SL  I
Sbjct: 438 RDNDGKTTYTGPLTVMVDRYSASASEIFAAALQDYDRALIVGESSFGKGTVQQHKSLGRI 497

Query: 491 YDLFDKELGYVQYTIQKFYRIDGGSTQNKGVVPDIAYPTAIAPSETGESVEDNALPWDSI 550
           YD+++K +G+VQYTIQKFYRI+GGSTQ KGV P+IAYP+A+ P E GE+ E NALPWD +
Sbjct: 498 YDMYEKPIGHVQYTIQKFYRINGGSTQLKGVTPNIAYPSALEPGEYGEAEEKNALPWDKV 557

Query: 551 DKAKYERLNNFN-TIIASLEAKHQQRVANDLEFGFIEQDIAKYRAEKDDNLLSLNEKVRK 609
             A+Y  LN+    ++ASLE KH  R+ N +EF +I QDIA ++    +  +SL E  R 
Sbjct: 558 PMAQYGTLNDITPELVASLEKKHLARIQNSVEFNYINQDIADFKKHHKEKTVSLVESER- 616

Query: 610 EESAKADEER-LARINQRQKALGKSTYASLQDIPKDYEAPDAYLDESVNIMLDMI 663
             S +ADE++ L R N+R+ A G +   S++DI  D  APDA+LDE+  I LDM+
Sbjct: 617 IASREADEKKVLDRTNERRVANGLAPVKSMEDIKDDVVAPDAFLDETAYITLDMV 671