Pairwise Alignments

Query, 708 a.a., ribosomal RNA large subunit methyltransferase K/L from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Predicted N6-adenine-specific DNA methylase from Pseudomonas stutzeri RCH2

 Score =  601 bits (1549), Expect = e-176
 Identities = 320/720 (44%), Positives = 444/720 (61%), Gaps = 22/720 (3%)

Query: 2   NQYLAVTSNGLENLLVEELTQLGINDAKPVQAGVKFKATNEQIYRCCLWSRLASRFVRIV 61
           ++ +     GLE LL+EE T LG+ +A+   + ++     E  YR CLWSRLA+R + ++
Sbjct: 5   HELILTCPKGLEGLLLEEATALGLEEAREQTSAIRGFGALEIAYRLCLWSRLANRVLLVI 64

Query: 62  AEFKCQNDLDLYLSTTSVNWVNYFHSSKKLVVDFNGTNREIRNSQYGAMKVKDAIVDCFT 121
           + F   +   LY    +V+W ++   +  L V+F+G    I N+ +GA+KVKDAIVD   
Sbjct: 65  SRFPTVDAETLYQGVHAVDWADHLQPAGSLAVEFSGRGSGIDNTHFGALKVKDAIVDRLR 124

Query: 122 KKNLPRPSISKDLADLHIHVRLHKENALLGIDMVGSGLHARGYRTEAGKAPLRETLAAAI 181
             +  RPSI K   DL +H+RL K  A+L +D+ G  LH RGYR + G APL+E LAAAI
Sbjct: 125 TASGERPSIDKLDPDLRVHLRLDKGQAVLSLDLSGHSLHQRGYRLQQGAAPLKENLAAAI 184

Query: 182 ILRSGWD----ASKPLLDPMCGSGTLLIEAAMMAANIAPGLQRKKWGFEALEDFEPELWA 237
           ++R+GW     A   L DPMCG GT L+E AMMAA+IAP L+R++WGF A     P +W 
Sbjct: 185 LIRAGWPRIAAAGGALTDPMCGVGTFLVEGAMMAADIAPNLKRERWGFSAWLGHVPAIWT 244

Query: 238 SVKSEASVQGKRGVKKVETHFYGVDNDNRVLQTAKDNARRAGVEELISFTLGDAAKVK-R 296
            + +EA  + + G+ K      G + D R++Q  ++N  RAG+   I    GD    + R
Sbjct: 245 RLHAEAVARAETGLAKPPLWIRGYEADPRLIQPGRNNIERAGLASWIKVYQGDVGDFEPR 304

Query: 297 PENFAEGIVICNPPYGERLGTHPGLIALYTAFGAQLKAEFGGCHASIFSSSDELLSCLRM 356
           P+   +G+VICNPPYGERLG    L+ LY   G +L+    G  A++F+++ +L   + +
Sbjct: 305 PDQNQKGLVICNPPYGERLGDEASLLYLYQNLGERLRQACLGWEAAVFTAAPDLGKRMGI 364

Query: 357 RADKQFKLNNGALPCHQKNYTIAMRE-----QNSVSNEGTQEILIAPD---------FAN 402
           R+ KQ+   NGALPC      + + +     + + S E TQ+               FAN
Sbjct: 365 RSHKQYAFWNGALPCKLLLIKVELDQFVTGQRGAASEESTQQQAPVEQARLSEGGQMFAN 424

Query: 403 RLKKNFNKIGKWAKREGLDCFRLYDADLPEYNVAIDVYQDHLMIQEYAAPKDIPEEKAKR 462
           RL+KN  ++GKWA+REG++C+RLYDAD+PEY +AID+Y+D + +QEYA P+ I  +KA+ 
Sbjct: 425 RLQKNLRQLGKWARREGIECYRLYDADMPEYALAIDLYRDWVHVQEYAPPRSIDPDKAQA 484

Query: 463 RLTDIIRAAIQVLDVDANNVVLKVRERQKGTSQYEKLGQQAQTMQITEYGVKLIVNLYDY 522
           RL D + A  Q L +    VV+K RERQ GT QYE+   Q + +++ E GVKL+VNL DY
Sbjct: 485 RLLDALAAIPQALGIAREKVVVKRRERQSGTRQYERQATQGEFLEVAEGGVKLLVNLTDY 544

Query: 523 LDTGLFLDHKITRRRLGQMAQGKDFLNLFAYTGSATVHAACGGAKSTTTVDMSKTYLEWA 582
           LDTGLFLDH+  R R+ + A GK FLNLF YT +ATVHAA GGA+STT+VD+SKTYL+WA
Sbjct: 545 LDTGLFLDHRPLRLRIQREAAGKRFLNLFCYTATATVHAAKGGARSTTSVDLSKTYLDWA 604

Query: 583 KENMQLNGQVGRQHQYVQADCLQWLANAQSQYDLIFIDPPTFSNSKRMEQTFDVQRDHVT 642
           + N+ LNG   RQ +  Q D + WL   + +YDLIFIDPPTFSNSKRME  FDVQRDH+ 
Sbjct: 605 RRNLALNGLSDRQ-RLEQGDVMAWLEEDRGEYDLIFIDPPTFSNSKRMEGVFDVQRDHLA 663

Query: 643 LMTNLKRLLRPEGTIVFSNNKRHFKMDMEALHALGLNAQNISHQTLPLDFERNKQIHNCW 702
           L+      L   GT+ FSNN R F +D        +  + I+  TL  DF RN +IH  W
Sbjct: 664 LLDLAMARLAAGGTLYFSNNFRKFVLDAGLSDRYAV--EEITASTLDEDFRRNPRIHRAW 721