Pairwise Alignments

Query, 708 a.a., ribosomal RNA large subunit methyltransferase K/L from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., class I SAM-dependent rRNA methyltransferase from Pseudomonas fluorescens SBW25-INTG

 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 71/281 (25%), Positives = 123/281 (43%), Gaps = 41/281 (14%)

Query: 418 EGLDCFRLYDADLPEYN-VAIDVYQDHLMIQEYAAPKDIPEEKAKRRLTDIIRAAIQVLD 476
           +G DC+R++         + ID Y   L++Q +       +      L D+ +   Q + 
Sbjct: 25  QGTDCYRVFHGSQEGAGGLTIDRYGPQLLVQSFH------QSLQTEALLDLHQQINQSMG 78

Query: 477 VDANNVVLKVRERQKGTSQYEK-----LGQQAQTMQIT--EYGVKLIVN-LYDYLDTGLF 528
           ++   ++L   +R +G S+ ++       + A    +   E+G+   V   +   D  LF
Sbjct: 79  LE---LLLVYNDRSRGNSRIDREDTVYRAEPAALEDLVGHEWGLNYRVRGRHAGQDPLLF 135

Query: 529 LDHKITRRRLGQMAQGKDFLNLFAYTGSATVHAACGGAKSTTTVDMSKTYLEWAKENMQL 588
           LD + TR  +   + GK  LNLFAYT    + AA GGA+    +D ++  L   +EN  L
Sbjct: 136 LDLRNTRGWVKAHSAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAVGRENGLL 195

Query: 589 NGQVGRQHQYVQAD---CLQWLAN-----------------AQSQYDLIFIDPPTFSNSK 628
           N Q+    ++VQ+D    ++ LA                   Q QYDL+ +DPP +  +K
Sbjct: 196 NPQLPTM-EFVQSDYFPAIRQLAGLPITQRRGQKLPSYPRLEQRQYDLVLLDPPAW--AK 252

Query: 629 RMEQTFDVQRDHVTLMTNLKRLLRPEGTIVFSNNKRHFKMD 669
               T D+ RD+ +L+          G ++  NN     M+
Sbjct: 253 SAFGTVDLLRDYQSLLKPALLATAENGVLICCNNLAKVSME 293