Pairwise Alignments

Query, 708 a.a., ribosomal RNA large subunit methyltransferase K/L from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., putative N6-adenine-specific DNA methylase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  232 bits (591), Expect = 4e-65
 Identities = 135/394 (34%), Positives = 213/394 (54%), Gaps = 11/394 (2%)

Query: 3   QYLAVTSNGLENLLVEELTQLGINDAKPVQAGVKFKATNEQIYRCCLWSRLASRFVRIVA 62
           + +A T  GLE +L EELT LG ND +  +  V F      +Y+     R A R ++ + 
Sbjct: 6   EMIAKTFQGLEEILAEELTTLGANDIQIGRRMVSFTGDKRMMYKANFCLRTAIRILKPIK 65

Query: 63  EFKCQNDLDLYLSTTSVNWVNYFHSSKKLVVDFNGTNREIRNSQYGAMKVKDAIVDCFTK 122
            F  ++  ++Y    ++ W  Y   +K   +D    + E R+S++ + KVKDAIVD F K
Sbjct: 66  NFTAKDADEVYNQIQAIPWEEYLDVNKTFAIDAVVFSEEFRHSKFVSYKVKDAIVDYFRK 125

Query: 123 KNLPRPSISKDLADLHIHVRLHKENALLGIDMVGSGLHARGYRTEAGKAPLRETLAAAII 182
           K   RPS+  +  D+ +++ + +    L +D  G  LH RGYR E   APL E LAA ++
Sbjct: 126 KTGKRPSVRINNPDVLLNIHIAQTTCTLSLDSSGESLHRRGYRQEQVDAPLNEVLAAGML 185

Query: 183 LRSGWDASKPLLDPMCGSGTLLIEAAMMAANIAPGLQRKKWGFEALEDFEPELWASVKSE 242
           L +GW     L+DPMCGSGT+ IEAA++A NIAPG+ RK + FE   DF+ E++  + ++
Sbjct: 186 LMTGWRGECDLIDPMCGSGTIPIEAALIARNIAPGVFRKGFAFEKWVDFDSEMFDEIYND 245

Query: 243 ASVQGKRGVKKVETHFYGVDNDNRVLQTAKDNARRAGVEELISFTLGDAAKVKRPENFAE 302
            S +     ++     YG DN+ +  + A  N + AGV + ++  L    + ++P+   +
Sbjct: 246 DSQE-----REFTHKIYGYDNNPKANEIATHNIKAAGVSKDVTLKLQPFQQFEQPQE--K 298

Query: 303 GIVICNPPYGERLGTHPGLIALYTAFGAQLKAEFGGCHASIFSSSDELLSCLRMRADKQF 362
            I++ NPPYGER+ T+  L+ LY   G +LK  F G  A + S  +E    + ++  K+ 
Sbjct: 299 SIIVMNPPYGERISTN-DLLGLYQMIGERLKHAFVGNEAWVLSYREECFDQIGLKPSKKV 357

Query: 363 KLNNGALPCHQKNYTI---AMREQNSVSNEGTQE 393
            L NGAL C  + Y I     +E  S   EG ++
Sbjct: 358 PLFNGALECEFRKYEIFDGKYKEFKSQEGEGEEK 391