Pairwise Alignments

Query, 639 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., ATP-binding cassette protein, ChvD family from Pseudomonas stutzeri RCH2

 Score =  311 bits (796), Expect = 6e-89
 Identities = 184/530 (34%), Positives = 302/530 (56%), Gaps = 13/530 (2%)

Query: 18  LLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQVMQDVVVSRLEQDPPR 77
           +L +   +     ++ ++G NGAGKSTL++++AG     DG+ + M  + V  L Q+P  
Sbjct: 30  ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDTEFDGEARAMPGINVGYLPQEPQL 89

Query: 78  NQAGTVFDYVSGGLQGIGEQLKIYQDQLDLV--ATDPSESNINKLAHIQEQLEV----SG 131
           +   TV + V    + +G  +K  Q +LD V  A    +++ + LA  Q +LE     S 
Sbjct: 90  DPEKTVREVVE---EAVGV-IKDAQARLDAVYAAYAEPDADFDALAAEQAKLEAILQASD 145

Query: 132 AWRFEDRIKNVLGSLKLDG-HTKLTDLSGGWQRKAALARALACDPDVLLLDEPTNHLDVT 190
               E +++    +L+L     K+  LSGG +R+ AL R L   PD+LLLDEPTNHLD  
Sbjct: 146 GHNLERQLEVAADALRLPAWDAKVAHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDAD 205

Query: 191 TIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDLDRGQLSSFPGDYENYLTEKEEMLR 250
           ++ WLE FL DF G+++ I+HDR F+ ++A  I++LDRG    + G+Y  +L  K   L 
Sbjct: 206 SVAWLERFLHDFPGTVVAITHDRYFLDNVAGWILELDRGAGIPYEGNYSGWLEAKSARLA 265

Query: 251 VEELQNAEFDKKLAQEEVWIRQGIKARRTRNEGRVRALKRLRQERSERREVQGKVNLQID 310
            E  Q +  +K + +E  W+R+G KAR+++++ R++  + ++ +  ++R    ++   I 
Sbjct: 266 QESKQQSAHEKAMKEELEWVRKGAKARQSKSKARLQRFEEMQSQEFQKRAETNEI--YIP 323

Query: 311 DSNRSGKIVFEAENLHYSIGGKTIVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGDLQ 370
              R G  V E +N+    G + ++D  SF++ +G  + +IG NG GKSTL ++L+G   
Sbjct: 324 AGPRLGDKVIEFKNVTKGYGDRVLIDNLSFSVPKGAIVGVIGGNGAGKSTLFRMLMGKET 383

Query: 371 PDSGKVHCGTKLEVAYFDQYRELLDPEKTVIDNLADGKQEVMVGGRLRHALSYLQDFLFS 430
           PDSG +  G  +++A  DQ R+ L+  KTV + ++DG  ++ +G     +  Y+  F F 
Sbjct: 384 PDSGSIEIGDTVQLACVDQSRDDLEGGKTVWEAVSDGLDQIRIGNYEVPSRGYVGRFNFK 443

Query: 431 PKRARTPVKALSGGEKNRLLLARILLKANNLLVLDEPTNDLDIETLELLEELLANYQGTL 490
               +  VK LSGGE+ RL LA  L +  N+L+LDEP+NDLD+ETL  LEE L ++ G+ 
Sbjct: 444 GADQQKFVKDLSGGERGRLHLALTLKQGANVLLLDEPSNDLDVETLRSLEEALLDFPGSA 503

Query: 491 LLVSHDREFVDNTVTSSWIFEGDGKIEEFVGGYHDAQQQRAQVLQSRAAE 540
           +++SHDR F+D   T    +E DG +  F G Y + +  R + L   A++
Sbjct: 504 IVISHDRWFLDRVATHILSYEDDGGVVFFEGNYTEYEADRKRRLGDAASQ 553



 Score =  108 bits (269), Expect = 8e-28
 Identities = 98/325 (30%), Positives = 150/325 (46%), Gaps = 50/325 (15%)

Query: 310 DDSNRSGKIVFEAENLHYSIGGKT-IVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGD 368
           D + ++G  V+    L   +  K  I+   S +   G +I ++G NG GKSTLL+I+ G 
Sbjct: 5   DKAGKTGSYVYTMHRLSKVVPPKREILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 64

Query: 369 LQPDSGKVHCGTKLEVAYFDQYRELLDPEKTV---------------------------- 400
                G+      + V Y  Q  + LDPEKTV                            
Sbjct: 65  DTEFDGEARAMPGINVGYLPQEPQ-LDPEKTVREVVEEAVGVIKDAQARLDAVYAAYAEP 123

Query: 401 ---IDNLA--DGKQEVMV----GGRLRHALSYLQDFLFSPKRARTPVKALSGGEKNRLLL 451
               D LA    K E ++    G  L   L    D L  P      V  LSGGEK R+ L
Sbjct: 124 DADFDALAAEQAKLEAILQASDGHNLERQLEVAADALRLP-AWDAKVAHLSGGEKRRVAL 182

Query: 452 ARILLKANNLLVLDEPTNDLDIETLELLEELLANYQGTLLLVSHDREFVDNTVTSSWIFE 511
            R+LL A ++L+LDEPTN LD +++  LE  L ++ GT++ ++HDR F+DN   + WI E
Sbjct: 183 CRLLLSAPDMLLLDEPTNHLDADSVAWLERFLHDFPGTVVAITHDRYFLDN--VAGWILE 240

Query: 512 GDG----KIEEFVGGYHDAQQQR-AQVLQSRAAENIVKKEKV--VEESPKSAPSKTKQKK 564
            D       E    G+ +A+  R AQ  + ++A     KE++  V +  K+  SK+K + 
Sbjct: 241 LDRGAGIPYEGNYSGWLEAKSARLAQESKQQSAHEKAMKEELEWVRKGAKARQSKSKARL 300

Query: 565 LSYKLQRELEALPQRLEELEVEIAA 589
             ++ + + +   +R E  E+ I A
Sbjct: 301 QRFE-EMQSQEFQKRAETNEIYIPA 324



 Score =  105 bits (263), Expect = 4e-27
 Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 35/249 (14%)

Query: 3   LITIHNGLLAFGDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQV 62
           +I   N    +GD  L+D+  F++ +   V ++G NGAGKSTL ++L G+   D G +++
Sbjct: 332 VIEFKNVTKGYGDRVLIDNLSFSVPKGAIVGVIGGNGAGKSTLFRMLMGKETPDSGSIEI 391

Query: 63  MQDVVVSRLEQDPPRNQAG-TVFDYVSGGLQGIGEQLKIYQDQLDLVATDPSESNINKLA 121
              V ++ ++Q     + G TV++ VS GL    +Q++I   ++      PS   + +  
Sbjct: 392 GDTVQLACVDQSRDDLEGGKTVWEAVSDGL----DQIRIGNYEV------PSRGYVGRF- 440

Query: 122 HIQEQLEVSGAWRFEDRIKNVLGSLKLDGHTKLTDLSGGWQRKAALARALACDPDVLLLD 181
                              N  G+   D    + DLSGG + +  LA  L    +VLLLD
Sbjct: 441 -------------------NFKGA---DQQKFVKDLSGGERGRLHLALTLKQGANVLLLD 478

Query: 182 EPTNHLDVTTIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDL-DRGQLSSFPGDYEN 240
           EP+N LDV T+  LE  L DF GS I ISHDR F+  +AT I+   D G +  F G+Y  
Sbjct: 479 EPSNDLDVETLRSLEEALLDFPGSAIVISHDRWFLDRVATHILSYEDDGGVVFFEGNYTE 538

Query: 241 YLTEKEEML 249
           Y  +++  L
Sbjct: 539 YEADRKRRL 547