Pairwise Alignments

Query, 639 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  328 bits (841), Expect = 4e-94
 Identities = 182/524 (34%), Positives = 298/524 (56%), Gaps = 9/524 (1%)

Query: 14  GDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQVMQDVVVSRLEQ 73
           G   +L     +     ++ ++G NGAGKST+++++AG      G+      V +  L Q
Sbjct: 19  GGKEILKGLSLSFLPGAKIGVLGPNGAGKSTVLRIMAGIDKEFGGEAWAADGVKIGYLAQ 78

Query: 74  DPPRNQAGTVFDYVSGGLQGIGEQLKIYQDQL----DLVATDPSESNINKLAHIQEQLEV 129
           +P  + A  V   V  G+  +   L  +++      ++V  D   + I + A IQE+++ 
Sbjct: 79  EPDLDPAKDVMGNVMDGVGPMKALLDRFEEVSAKFGEVVDDDEMNALIAEQAEIQEKIDA 138

Query: 130 SGAWRFEDRIKNVLGSLKLD-GHTKLTDLSGGWQRKAALARALACDPDVLLLDEPTNHLD 188
           +  W  + +++  + +L+   G   +T LSGG +R+ AL R L   PD+LLLDEPTNHLD
Sbjct: 139 ADGWDLQRQVEIAMDALRCPPGEADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 198

Query: 189 VTTIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDLDRGQLSSFPGDYENYLTEKEEM 248
             ++ WLE FL+ + G+++ I+HDR F+ + A  I+++DRG+   + G+Y  YL  K++ 
Sbjct: 199 AESVGWLEHFLQQYPGTVVAITHDRYFLDNAANWILEVDRGRGIPYEGNYSTYLENKQKR 258

Query: 249 LRVEELQNAEFDKKLAQEEVWIRQGIKARRTRNEGRVRALKRLRQERSERREVQGKVNLQ 308
           L  E  +    DK +++E  WIRQ  KAR+ +++ R+ A + L      ++    ++ + 
Sbjct: 259 LEQESREEGARDKTISRELEWIRQSPKARQAKSKARITAYENLVASAGSQKVESAQIVIP 318

Query: 309 IDDSNRSGKIVFEAENLHYSIGGKTIVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGD 368
           I  + R G +V EAE L    G + ++D  +F +  G  + +IG NG GK+TL K++ G 
Sbjct: 319 I--AERLGGVVIEAEGLTKGFGDRLLIDDLTFRLPPGGIVGVIGANGAGKTTLFKMITGK 376

Query: 369 LQPDSGKVHCGTKLEVAYFDQYRELLDPEKTVIDNLADGKQEVMVGGRLRHALSYLQDFL 428
            QPDSG +  G  + + Y DQ R+ LDP KTV   ++DG+ E+ +G R   + +Y+  F 
Sbjct: 377 DQPDSGAIRIGETVRLGYVDQSRDALDPNKTVWQEISDGQDELDLGKRKIPSRAYVGQFN 436

Query: 429 FSPKRARTPVKALSGGEKNRLLLARILLKANNLLVLDEPTNDLDIETLELLEELLANYQG 488
           F     +  V  LSGGE+NR+ LA++L    N+L+LDEPTNDLD+ETL  LE+ L  + G
Sbjct: 437 FKGSDQQKKVGQLSGGERNRVHLAKMLKSHANVLLLDEPTNDLDVETLRALEDALLEFAG 496

Query: 489 TLLLVSHDREFVDNTVTSSWIFEGDGKIEEFVGGY--HDAQQQR 530
             +++SHDR F+D   T    FEGD  +E F G +  ++A ++R
Sbjct: 497 CAVVISHDRWFLDRIATHILSFEGDSHVEWFEGNFEAYEADKKR 540



 Score =  103 bits (256), Expect = 3e-26
 Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 43/243 (17%)

Query: 13  FGDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQVMQDVVVSRLE 72
           FGD  L+D   F L     V ++G NGAGK+TL K++ G+   D G +++ + V +  ++
Sbjct: 337 FGDRLLIDDLTFRLPPGGIVGVIGANGAGKTTLFKMITGKDQPDSGAIRIGETVRLGYVD 396

Query: 73  Q-----DPPRNQAGTVFDYVSGGLQGIGEQLKIYQDQLDLVATDPSESNINKLAHIQEQL 127
           Q     DP +    TV+  +S G           QD+LDL      +  I   A++    
Sbjct: 397 QSRDALDPNK----TVWQEISDG-----------QDELDL-----GKRKIPSRAYV---- 432

Query: 128 EVSGAWRFEDRIKNVLGSLKLDGHTKLTDLSGGWQRKAALARALACDPDVLLLDEPTNHL 187
              G + F+       GS   D   K+  LSGG + +  LA+ L    +VLLLDEPTN L
Sbjct: 433 ---GQFNFK-------GS---DQQKKVGQLSGGERNRVHLAKMLKSHANVLLLDEPTNDL 479

Query: 188 DVTTIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDLD-RGQLSSFPGDYENYLTEKE 246
           DV T+  LE  L +F G  + ISHDR F+  +AT I+  +    +  F G++E Y  +K+
Sbjct: 480 DVETLRALEDALLEFAGCAVVISHDRWFLDRIATHILSFEGDSHVEWFEGNFEAYEADKK 539

Query: 247 EML 249
             L
Sbjct: 540 RRL 542