Pairwise Alignments

Query, 639 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  446 bits (1146), Expect = e-129
 Identities = 258/638 (40%), Positives = 366/638 (57%), Gaps = 41/638 (6%)

Query: 3   LITIHNGLLAFGDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQV 62
           L+++ +  L FG  PL       ++   R+CLVGRNG GKSTL+KV+AG++L D G++ V
Sbjct: 5   LLSLRDITLGFGGRPLFRGVSADVEPGARLCLVGRNGGGKSTLLKVMAGQVLADGGELFV 64

Query: 63  MQDVVVSRLEQDPPRNQAGTVFDYVSGGLQGIGEQLKIYQDQLDLVATDPSESNINKLAH 122
              V VS L+Q+P      ++ D V  GL G                  P     +    
Sbjct: 65  QPGVAVSYLQQEPELGDHASLRDVVVEGLPG------------------PHRGETH---- 102

Query: 123 IQEQLEVSGAWRFEDRIKNVLGSLKLDGHTKLTDLSGGWQRKAALARALACDPDVLLLDE 182
                          R   VL +L LD       LSGG  R+ ALARAL  + ++LLLDE
Sbjct: 103 ---------------RADIVLEALGLDPERAPVGLSGGEARRVALARALVGESEILLLDE 147

Query: 183 PTNHLDVTTIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDLDRGQLSSFPGDYENYL 242
           PTNHLD+  I WLE  L  +RG+++ ISHDRAF+  +    + LDRG +      +  + 
Sbjct: 148 PTNHLDLPAITWLEERLAAYRGALVLISHDRAFLARLTKATLWLDRGVVRRLDQGFAAFE 207

Query: 243 TEKEEMLRVEELQNAEFDKKLAQEEVWIRQGIKARRTRNEGRVRALKRLRQERSERREVQ 302
             ++E L  E   + + DK +A+E  W  QGI ARR RN+GR+  L  LR +R ++  VQ
Sbjct: 208 GWRDETLEQEAQASHKLDKLIAEETRWSHQGISARRKRNQGRLARLYDLRHDREQQVAVQ 267

Query: 303 GKVNLQIDDSNRSGKIVFEAENLHYSIGGKTIVDGFSFNIMRGDRIALIGPNGCGKSTLL 362
           G   L+ +    SGK+V EAE +  + G + ++  FS  ++RGDR+ ++GPNG GKSTLL
Sbjct: 268 GLAKLKAEAGGVSGKLVIEAEAVSKAYGERVVLQDFSLRLLRGDRLGIVGPNGAGKSTLL 327

Query: 363 KILLGDLQPDSGKVHCGTKLEVAYFDQYRELLDPEKTVIDNLAD-GKQEVMVGGRLRHAL 421
           KIL G L PDSG V  GT L   Y DQ R  LDP K+V + L D G   V V GR +H +
Sbjct: 328 KILTGALAPDSGSVRLGTNLTTTYLDQSRSSLDPTKSVRETLCDMGGDMVNVRGRPQHVI 387

Query: 422 SYLQDFLFSPKRARTPVKALSGGEKNRLLLARILLKANNLLVLDEPTNDLDIETLELLEE 481
            Y++DFLF  ++A +PV +LSGGE+NRLLLA+ L + +NL++LDEPTNDLD+ETL+LL++
Sbjct: 388 GYMRDFLFEDRQAVSPVGSLSGGERNRLLLAKALARESNLMILDEPTNDLDMETLDLLQD 447

Query: 482 LLANYQGTLLLVSHDREFVDNTVTSSWIFEGDGKIEEFVGGYHDAQQQRAQVLQSRAAEN 541
           +L++Y+GTLLLVSHDR+F+D  V S+ + +G G   E+ GGY DA +Q        A + 
Sbjct: 448 VLSDYEGTLLLVSHDRDFLDRVVGSTVLMDGAGGAREYPGGYSDAIRQAGGAPWETARDK 507

Query: 542 IVKKEKVVEESPKS-APSK--TKQKKLSYKLQRELEALPQRLEELEVEIAALQDIVNSPD 598
               E      P + +P+K   +  KLSYK QR+LE LP +++ L  EIA L+  +    
Sbjct: 508 TKSGEGRGGAKPSAKSPAKPAARPTKLSYKQQRQLELLPAQIDRLHSEIATLEAALTDSQ 567

Query: 599 FFSQPVDKTQPILDKLTATEQELEIAFERWEELEAMQQ 636
           FF +  +      D++ A   EL  A + W ELE +++
Sbjct: 568 FFVRDPEGYAGKADRMEAARAELAKAEDEWLELEMLRE 605