Pairwise Alignments

Query, 639 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., ABC transporter ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  343 bits (881), Expect = 1e-98
 Identities = 211/637 (33%), Positives = 347/637 (54%), Gaps = 26/637 (4%)

Query: 4   ITIHNGLLAFGDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQVM 63
           + + N   +FGD  L ++  F + E +RV L+ +NG+GK+TL+ ++AG+   D G +   
Sbjct: 6   LQVDNLTKSFGDLVLFENISFGIAEGQRVGLIAKNGSGKTTLLNIIAGKEGYDSGNIVFR 65

Query: 64  QDVVVSRLEQDPPRNQAGTVFDYVSGGLQGIGEQLKIYQDQLDLVATDPSESNINKLAHI 123
           +D+ V  LEQDP   +  TV +          E +K Y+  ++   T+      + LA +
Sbjct: 66  RDLRVDYLEQDPQYPEELTVLEACFHHGNSTVELIKEYERCME---TEGHPGLEDLLARM 122

Query: 124 QEQLEVSGAWRFEDRIKNVLGSLKLDGHT-KLTDLSGGWQRKAALARALACDPDVLLLDE 182
            ++     AW +E + K +L  LK+     ++  LSGG  ++ ALA AL  +PD+L+LDE
Sbjct: 123 DQEK----AWEYEQKAKQILSQLKIRNFDQRVKQLSGGQLKRVALANALITEPDLLILDE 178

Query: 183 PTNHLDVTTIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDLDRGQLSSFPGDYENYL 242
           PTNHLD+   EWLE +L+    S++ ++HDR F+  + + I+++D  Q+  + G+Y  YL
Sbjct: 179 PTNHLDLDMTEWLEDYLRRTNLSLLMVTHDRYFLDRVCSEIIEIDNQQIYQYKGNYSYYL 238

Query: 243 TEKEEMLRVEELQNAEFDKKLAQEEVWIRQGIKARRTRNEGRVRALKRLRQERSERREVQ 302
            +++E +  + ++    +     E  W+R+  +AR  +   R  A   L +   +R    
Sbjct: 239 EKRQERIEAKSVEIERANNLYRTELDWMRRMPQARGHKARYREDAFYELEKVAKQRFN-N 297

Query: 303 GKVNLQIDDSNRSGKIVFEAENLHYSIGGKTIVDGFSFNIMRGDRIALIGPNGCGKSTLL 362
             V L++  S    KI FEA++L  S G   I+D FS+   R +++ ++G NG GKST +
Sbjct: 298 DNVKLEVKASYIGSKI-FEADHLFKSYGDLKILDDFSYIFARYEKMGIVGNNGTGKSTFI 356

Query: 363 KILLGDLQPDSGKVHCGTKLEVAYFDQYRELLDPEKTVIDNLADGKQEVMVG-GRLRHAL 421
           KIL+G ++PDSG V  G  +   Y+ Q     D +  VID + D  + + +G G+   A 
Sbjct: 357 KILMGQVKPDSGTVDVGETVRFGYYSQDGLQFDEQMKVIDVVQDIAEVIELGNGKRLTAS 416

Query: 422 SYLQDFLFSPKRARTPVKALSGGEKNRLLLARILLKANNLLVLDEPTNDLDIETLELLEE 481
            +LQ FLF+P+   + V  LSGGE+ RL L  +L++  N LVLDEPTNDLDI TL +LEE
Sbjct: 417 QFLQHFLFTPETQHSYVYKLSGGERRRLYLCTVLMRNPNFLVLDEPTNDLDIITLNVLEE 476

Query: 482 LLANYQGTLLLVSHDREFVDNTVTSSWIFEGDGKIEEFVGGYHDAQQQRAQVLQSRAAEN 541
            L N++G +++VSHDR F+D  V    +F G G I +F G Y D +  +         E 
Sbjct: 477 YLQNFKGCVIVVSHDRYFMDKVVDHLMVFNGQGDIRDFPGNYSDYRDWK---------EA 527

Query: 542 IVKKEKVVEESPKSAPSKTK---QKKLSYKLQRELEALPQRLEELEVEIAALQDIVNSPD 598
             +KEK  E+  +   ++ +   ++K+S+K +RE E L + + ELE E A +++++ S  
Sbjct: 528 KAQKEKEAEKPQEEKTARVRLNDKRKMSFKEKREFEQLEKEIAELEAEKAQIEELLCSG- 586

Query: 599 FFSQPVDKTQPILDKLTATEQELEIAFERWEELEAMQ 635
                VD+      +L      ++    RW EL  ++
Sbjct: 587 --MLSVDELTEKSKRLPEVNDLIDEKTMRWLELSEIE 621