Pairwise Alignments

Query, 639 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., ABC transporter ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  304 bits (779), Expect = 6e-87
 Identities = 173/528 (32%), Positives = 296/528 (56%), Gaps = 26/528 (4%)

Query: 31  RVCLVGRNGAGKSTLMKVLAGEILLDDGKMQVMQDVVVSRLEQDPPRNQAGTVFDYVSGG 90
           ++ ++G NG+GKSTL+K++AG      G++       V  L Q+P  +   TV + V  G
Sbjct: 37  KIGIIGLNGSGKSTLLKIIAGLEKSYQGEVVFSPGYSVGYLAQEPYLDDTKTVKEVVMEG 96

Query: 91  LQGIGEQLKIY---------------QDQLDLVATDPSESNINKLAHIQEQLEVSGAWRF 135
           +Q I + L  Y               QD++D++     E        +Q+ ++ + AW  
Sbjct: 97  VQPIVDALAEYEEINQKFGLPEYYEDQDKMDILFARQGE--------LQDIIDATDAWNL 148

Query: 136 EDRIKNVLGSLKLDGHTK-LTDLSGGWQRKAALARALACDPDVLLLDEPTNHLDVTTIEW 194
           + +++  + +L+     + + +LSGG +R+ AL R L   PD+LLLDEPTNHLD  +I+W
Sbjct: 149 DSKLERAMDALRCPPEDQPVVNLSGGERRRVALCRLLLQKPDILLLDEPTNHLDAESIDW 208

Query: 195 LEGFLKDFRGSIIFISHDRAFIKSMATRIVDLDRGQLSSFPGDYENYLTEKEEMLRVEEL 254
           LE  L+ + G++I ++HDR F+  +A  I++LDRG+   + G+Y ++L +K + + +EE 
Sbjct: 209 LEQHLQQYEGTVIAVTHDRYFLDHVAGWILELDRGEGIPWKGNYSSWLEQKTKRMEMEEK 268

Query: 255 QNAEFDKKLAQEEVWIRQGIKARRTRNEGRVRALKRLRQERSERREVQGKVNLQIDDSNR 314
             ++  K L +E  W+R   KAR+ + + R+ +  +L  E  + +E + K+ + I +  R
Sbjct: 269 TASKRRKTLERELEWVRMAPKARQAKGKARLNSYDKLLNE--DLKEKEEKLEIFIPNGPR 326

Query: 315 SGKIVFEAENLHYSIGGKTIVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGDLQPDSG 374
            G  V EA+++  + G K + D  +F +     + +IGPNG GK+TL ++++G    D G
Sbjct: 327 LGNKVIEAKHVAKAYGDKLLFDDLNFMLPPNGIVGVIGPNGAGKTTLFRLIMGLETVDKG 386

Query: 375 KVHCGTKLEVAYFDQYRELLDPEKTVIDNLADGKQEVMVGGRLRHALSYLQDFLFSPKRA 434
           +   G  ++V+Y DQ  + +DP K+V   ++ G   + +GGR  +A +YL  F F+    
Sbjct: 387 EFEVGETVKVSYVDQQHKDIDPNKSVYQVISGGNDLIRMGGRDINARAYLSRFNFAGADQ 446

Query: 435 RTPVKALSGGEKNRLLLARILLKANNLLVLDEPTNDLDIETLELLEELLANYQGTLLLVS 494
                 LSGGE+NRL LA  L +  N+L+LDEPTND+D+ TL  LEE L ++ G  +++S
Sbjct: 447 EKLCGVLSGGERNRLHLAIALKEEGNVLLLDEPTNDIDVNTLRALEEGLEDFAGCAVVIS 506

Query: 495 HDREFVDNTVTSSWIFEGDGKIEEFVGGYHDAQQQRAQVLQSRAAENI 542
           HDR F+D   T    FEGD  +  F G Y + ++ + + L +   + +
Sbjct: 507 HDRWFLDRICTHILAFEGDSNVFYFEGSYSEYEENKLKRLGNEEPKRV 554



 Score =  107 bits (266), Expect = 2e-27
 Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 54/305 (17%)

Query: 332 KTIVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGDLQPDSGKVHCGTKLEVAYFDQYR 391
           K ++     +   G +I +IG NG GKSTLLKI+ G  +   G+V       V Y  Q  
Sbjct: 22  KNVLKDIYLSFFYGAKIGIIGLNGSGKSTLLKIIAGLEKSYQGEVVFSPGYSVGYLAQ-E 80

Query: 392 ELLDPEKTVIDNLADGKQEVMVG------------------------------GRLRHAL 421
             LD  KTV + + +G Q ++                                G L+  +
Sbjct: 81  PYLDDTKTVKEVVMEGVQPIVDALAEYEEINQKFGLPEYYEDQDKMDILFARQGELQDII 140

Query: 422 SYLQDFLFSPKRART-----------PVKALSGGEKNRLLLARILLKANNLLVLDEPTND 470
                +    K  R            PV  LSGGE+ R+ L R+LL+  ++L+LDEPTN 
Sbjct: 141 DATDAWNLDSKLERAMDALRCPPEDQPVVNLSGGERRRVALCRLLLQKPDILLLDEPTNH 200

Query: 471 LDIETLELLEELLANYQGTLLLVSHDREFVDNTVTSSWIFEGD-GKIEEFVGGYHDAQQQ 529
           LD E+++ LE+ L  Y+GT++ V+HDR F+D+   + WI E D G+   + G Y    +Q
Sbjct: 201 LDAESIDWLEQHLQQYEGTVIAVTHDRYFLDH--VAGWILELDRGEGIPWKGNYSSWLEQ 258

Query: 530 RAQVLQ------SRAAENIVKKEKVVEESPKSAPSKTKQKKLSY-KLQRELEALPQRLEE 582
           + + ++      S+  + + ++ + V  +PK+  +K K +  SY KL    E L ++ E+
Sbjct: 259 KTKRMEMEEKTASKRRKTLERELEWVRMAPKARQAKGKARLNSYDKLLN--EDLKEKEEK 316

Query: 583 LEVEI 587
           LE+ I
Sbjct: 317 LEIFI 321



 Score = 98.2 bits (243), Expect = 9e-25
 Identities = 81/254 (31%), Positives = 121/254 (47%), Gaps = 43/254 (16%)

Query: 12  AFGDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQVMQDVVVSRL 71
           A+GD  L D  +F L  N  V ++G NGAGK+TL +++ G   +D G+ +V + V VS +
Sbjct: 340 AYGDKLLFDDLNFMLPPNGIVGVIGPNGAGKTTLFRLIMGLETVDKGEFEVGETVKVSYV 399

Query: 72  EQ-----DPPRNQAGTVFDYVSGGLQGIGEQLKIYQDQLDLVATDPSESNINKLAHIQEQ 126
           +Q     DP +    +V+  +SGG            D + +   D     IN  A++  +
Sbjct: 400 DQQHKDIDPNK----SVYQVISGG-----------NDLIRMGGRD-----INARAYL-SR 438

Query: 127 LEVSGAWRFEDRIKNVLGSLKLDGHTKLTDLSGGWQRKAALARALACDPDVLLLDEPTNH 186
              +GA                D       LSGG + +  LA AL  + +VLLLDEPTN 
Sbjct: 439 FNFAGA----------------DQEKLCGVLSGGERNRLHLAIALKEEGNVLLLDEPTND 482

Query: 187 LDVTTIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDLD-RGQLSSFPGDYENYLTEK 245
           +DV T+  LE  L+DF G  + ISHDR F+  + T I+  +    +  F G Y  Y   K
Sbjct: 483 IDVNTLRALEEGLEDFAGCAVVISHDRWFLDRICTHILAFEGDSNVFYFEGSYSEYEENK 542

Query: 246 EEMLRVEELQNAEF 259
            + L  EE +   +
Sbjct: 543 LKRLGNEEPKRVRY 556