Pairwise Alignments

Query, 522 a.a., replication protein from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., phage/plasmid replication protein, gene II/X family from Pseudomonas stutzeri RCH2

 Score =  184 bits (468), Expect = 4e-51
 Identities = 133/432 (30%), Positives = 207/432 (47%), Gaps = 35/432 (8%)

Query: 1   MIDMFHINIPFKKDVII-EMGDCG----FVDFAKLAEKTELKIACGNVEFSVVNDQKK-V 54
           M+D  H+ +PF+ D I    G  G     VD   L               SV++D K   
Sbjct: 1   MLDKIHLFVPFRVDAIATSTGKRGNELLVVDLEALGVPLRAT--------SVLSDGKGGY 52

Query: 55  RTDDLYHPWSTIPSSYTDIACKVFDAEPRANVFWGYLQLKASPAKVMQGHNVYGSEDFRL 114
           + +D+ H W ++ + +T +A KVF       +  G ++LKASPAK++QGHNV+G    R 
Sbjct: 53  QVEDISHAWESLSTGFTPLAFKVFHQSLGKRIQPG-VELKASPAKLLQGHNVFGPTSIRK 111

Query: 115 CVEYLLDSLQKAQPELWELLDVGLAEMTRIDCTYSIKCANPDILRQTIKQMGNVSNRYIK 174
             E +L  L  + P+LW LLD   AE+  IDCTYS +  +     Q ++ +  VSN   +
Sbjct: 112 GGEVMLKWLAGSYPKLWALLDWQAAEVYGIDCTYSARLPDQRTALQLVQALRGVSNGQTR 171

Query: 175 PARNSDFETTLYFNRATKANPGAGRSFELCIYTKHDEIAHQLADLKRRARQGDSDRF--- 231
             R  D+ETT Y+           R  +L  Y K  E   QL D  + AR      F   
Sbjct: 172 -NRGDDYETTAYWGSKET------RLRKLKAYLKGPEFRRQLDDAIKAARAYGGANFVPS 224

Query: 232 -----NRIIDELSKPELQAFAANRLRFEGRAKKRFIQKHVGSANLWQVIRHAEQFEAKNG 286
                +R++  L  P LQ +A N LR E     R++++     NLW +  + E+ E + G
Sbjct: 225 QAFAAHRLLSVLQNPALQEWAENLLRLEATVMHRWLERRNIPTNLWALCDYQERLE-EQG 283

Query: 287 YRFCEWMFKTLFHDLLESLKGEELELYNDSKIKQLLRDAYSTMTPKGNISYAKADRLFRF 346
             F +W ++ +  +L  + +G  + + ND K+   L+  ++     G  +   A  LFR 
Sbjct: 284 SCFIQWCWEQVTKELFAAFEGISMRVINDEKVLAALKARWTKFGKNGKANETVALNLFRT 343

Query: 347 YMTLCDRGYQELKAHSSKATLHRNMRDLMAIGFSKADLQNLSEGER----MPLAQVLNFN 402
           Y ++ D G+QE     S+AT +R++  +   G SKA LQ L   ++    +P+ + L  +
Sbjct: 344 YRSIKDYGWQETMDSMSRATFYRHVDQICECGLSKAALQKLKMDDQKNNVVPILRFLQVD 403

Query: 403 FDNQRPANYVEP 414
           F  QRP  YVEP
Sbjct: 404 FSAQRPGWYVEP 415