Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 719 a.a., ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing from Pseudomonas fluorescens FW300-N2E2

 Score =  293 bits (750), Expect = 2e-83
 Identities = 170/588 (28%), Positives = 306/588 (52%), Gaps = 13/588 (2%)

Query: 122 ISSHELNSTWNKKSLVIQQAQSRFDI---------TWFIPEFLQHKRVLSEILLFSFVLQ 172
           +S  EL + ++ ++L  +      D+          WF       + + S+ +L SF++ 
Sbjct: 120 VSREELTTDYSGQALFARPRHELEDLRAPLVPRVEAWFRDTLKLSRWLYSDAILASFLIN 179

Query: 173 ILALISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEVVLRGLREYQYAHTANRIDI 232
           +L L+ PLF     D+V+ +QA STL VL  GL+I    E+VLR +R +       + D+
Sbjct: 180 LLGLMVPLFVMQTYDRVVPNQATSTLWVLAVGLLIGTGFELVLRVVRAHLLDTAGKKTDV 239

Query: 233 QLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLTGSMFTLTVELLFMFVFLYV 292
            L   L + + G+  M  K   +G     + +   +REFLT    T  ++L F  + L V
Sbjct: 240 ILSATLFERITGMA-MKAKPVTIGGFAQSIHDFQGLREFLTAVTLTSLIDLPFALLMLVV 298

Query: 293 MSLLSAPLTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHAAANTSFLTETVAGSETLKS 352
           + LL   L  + +   P  ++ A  +  R++  ++K  +  A   + L ET+ G ETLK+
Sbjct: 299 IGLLGGWLVVIPVVAFPITIVFAMIIQVRLRDTVQKSLALGAQRQALLIETLGGLETLKA 358

Query: 353 LAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQKITSVAILWLGATEVLSLEM 412
            + E     +W+     +       + L+  + +    LQ++  +A +  G   +++  +
Sbjct: 359 CSAESERQHQWESTHGALTRLDSHARNLSALATNGTLFLQQLAGMATIVAGVYSIIAGNL 418

Query: 413 TIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDMLNLPVEQHTGS---DNVT 469
           ++G L+A  M+ + +  PL ++  L  ++ Q ++ +     ++ LP E+       D   
Sbjct: 419 SVGALVATYMLGSRVLAPLGQIAGLITRYQQAQLTMRSTDALMALPQERDAKQRPLDRTQ 478

Query: 470 ISGAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSGSGKSTLARLLLRLYSPEQ 529
           + GA+    + F Y     P + ++S  ++ GE +G++G SGSGKSTLARL++  Y+PE+
Sbjct: 479 LQGALDVSGVTFHYNGQSSPALANISFSLKPGERVGIIGRSGSGKSTLARLVMGFYAPEE 538

Query: 530 GSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSKPEASLEEIIEAAKLSG 589
           G + +DG+ L  ++V  LRQ++G V  +  L   S+ +N+       S   ++E A+L+G
Sbjct: 539 GQLLLDGLDLRQLDVADLRQQIGYVAHDLPLLAGSLRDNLTLGARYISDARMLEVAELTG 598

Query: 590 AHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVLILDEATSALDDESQAV 649
             +   + P G+D  + E GQ LSGGQRQ + +AR LL DP +L+LDE TSA+D+ S+ V
Sbjct: 599 VTELARQHPQGFDRPVGERGQLLSGGQRQAVLLARALLLDPPILLLDEPTSAMDNSSEDV 658

Query: 650 IQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGSHQQLL 697
           ++  + +  +G+TV+ + HR S +   DR++VL  G IV  G  + ++
Sbjct: 659 LRQKLHTHVQGKTVLLVTHRTSMLSLVDRLVVLDNGRIVADGPKEAVI 706