Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  441 bits (1135), Expect = e-128
 Identities = 232/602 (38%), Positives = 379/602 (62%), Gaps = 10/602 (1%)

Query: 122 ISSHELNSTWNKKSLVI-----QQAQS-RFDITWFIPEFLQHKRVLSEILLFSFVLQILA 175
           +S  E    W     ++     Q  QS RF ++WF P   +++  L E+L+ S V+Q+  
Sbjct: 398 LSLAEFQQRWGNAGTILLATKTQFTQSQRFGLSWFWPSIQRYRVRLIEVLIASLVVQLFT 457

Query: 176 LISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEVVLRGLREYQYAHTANRIDIQLG 235
           L +PL  Q V+DKV+   + + L+     LVI GV + +L  LR Y +A T NRID++LG
Sbjct: 458 LANPLIIQQVIDKVIGQGSLNNLNSFAVLLVILGVFQGLLSSLRTYLFADTTNRIDLKLG 517

Query: 236 LKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLTGSMFTLTVELLFMFVFLYVMSL 295
             ++  L  LPL +F+ R VG + +RV+EL+ IR FLTG+  T  ++ +F  +++ VM +
Sbjct: 518 SDIIDRLLKLPLRYFERRPVGELSSRVQELEKIRSFLTGTALTTVMDAMFSVIYILVMLV 577

Query: 296 LSAPLTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHAAANTSFLTETVAGSETLKSLAV 355
            S  LT + ++TVP +V + ++ +P ++  + ++    A   S L E ++G +T+K+  +
Sbjct: 578 YSWFLTLVALSTVPIFVAITFFASPVVRRQLREKAERNAETQSQLVEVLSGIQTVKAQNI 637

Query: 356 EPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQKITSVAILWLGATEVLSLEMTIG 415
           E +   +W E+  + +  G+     +  ++ L     +++ + +LW+G   V   ++++G
Sbjct: 638 ELKARWQWQERYARYIAAGFRNINTSTAASSLTNFFNQLSGLLVLWVGVYLVFDNQLSLG 697

Query: 416 QLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDMLNLPVEQHTGSDNVT----IS 471
           QLIAF +++ ++ QPL R+ +LW  F +T +++E+L D+++ P E             I+
Sbjct: 698 QLIAFRIISGYVTQPLLRLAQLWQNFQETALSLERLADIVDTPQESDDDDQGKIPMPMIN 757

Query: 472 GAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSGSGKSTLARLLLRLYSPEQGS 531
           G + F+N+ FR+    P  +++++L+I AGE +G+VG SGSGKSTL +LL RLYSP +G 
Sbjct: 758 GKVEFRNLSFRFGEQGPLQLSNVTLEIPAGEYVGIVGQSGSGKSTLMKLLPRLYSPLEGE 817

Query: 532 ITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSKPEASLEEIIEAAKLSGAH 591
           I IDG  ++ + +  LR+++G+V Q++ LF  +V ENI+ +KP A+ +EII AAK +GAH
Sbjct: 818 ILIDGYDISKVELYSLRRQIGIVPQDSLLFQGTVEENISLTKPNATTDEIITAAKAAGAH 877

Query: 592 DFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVLILDEATSALDDESQAVIQ 651
           DFI+ LP+GY+T + E G +LSGGQRQR+AIART+L +P++LILDEATSALD +++  + 
Sbjct: 878 DFIMTLPLGYNTRVGERGGALSGGQRQRIAIARTVLQNPQLLILDEATSALDYDTERQVS 937

Query: 652 ANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGSHQQLLAYGKQYKQLWQLQQ 711
            N+    RG+TV  I HRLSTVR  DRIIV+ +G +VEQGSH +L+    +Y  L++ Q 
Sbjct: 938 INLQQHFRGKTVFFITHRLSTVRHADRIIVMDKGAMVEQGSHDELMELRGRYFCLYRQQD 997

Query: 712 EL 713
            L
Sbjct: 998 AL 999