Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  266 bits (679), Expect = 3e-75
 Identities = 184/558 (32%), Positives = 293/558 (52%), Gaps = 28/558 (5%)

Query: 172 QILALISPLFFQVVMDKVLVHQAWSTL----DVLVFGLVITGVIEVVLRGLREYQYAHTA 227
           ++  ++ PLF++  +D + V +  + +     +  +GL   G   +    +R+  +A   
Sbjct: 53  KLAGVVVPLFYKHAVDALSVPERAAIVLPLGVIAAYGLARLG--NLAFTEIRDLLFARVI 110

Query: 228 NRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDT------IREFLTGSMFTLTV 281
            R    L L+  +HL GL L F   RQ G + +RV E  T      +R+F+  +  +L +
Sbjct: 111 ERAIHVLSLRTFRHLHGLSLRFHLDRQTGGL-SRVIERGTRAIEVVLRQFVLRAGPSL-I 168

Query: 282 ELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHAAANTSFLT 341
           EL+ +   L+  +L       + +  +  YV     +T           +H A  +S   
Sbjct: 169 ELVMVCGVLW--TLYDWTYAVVMVGALAVYVAWTLAITEWRLDFRRSMNTHDAEASSKAI 226

Query: 342 ETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQK----ITSV 397
           +++   ET+K    E    +R+D    + ++   +V   ++RS  L+ + Q     ++ V
Sbjct: 227 DSLINYETVKYFGNEEHEAKRFD----RALSAYEEVAVKSHRSLSLLNVGQSAIISLSLV 282

Query: 398 AILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDMLNL 457
           A++ + A ++    MT G  +  N     +  PL  +  ++ +  Q  V +E L  +++ 
Sbjct: 283 AVMIMAAVDIRGGRMTPGDFVLVNTYLLQLYVPLNFLGMVYREVKQGLVDMEVLFGLIDR 342

Query: 458 PVE---QHTGSDNVTISGAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSGSGK 514
           P E       +D V   GA+ F+ + F Y P+    +  +SL+I AG TL VVG SG+GK
Sbjct: 343 PPEVADPANAADLVVRGGAVRFEGVRFAYNPE-REVLKGVSLEIPAGGTLAVVGHSGAGK 401

Query: 515 STLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSKP 574
           STL+RLL R Y    G + IDG  L  +    LR+ +G+V Q+  LF+ ++  NIA  +P
Sbjct: 402 STLSRLLFRFYDVTGGRVLIDGQDLRDVTQASLRRAIGIVPQDTVLFNDTIGYNIAYGRP 461

Query: 575 EASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVLI 634
            AS +E+  AA+L+  HDF+  L  GYDT + E G  LSGG++QR+AIART+L DP +LI
Sbjct: 462 GASRQEVERAARLAAIHDFVQSLKNGYDTQVGERGLKLSGGEKQRVAIARTILKDPAILI 521

Query: 635 LDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGSHQ 694
           LDEATSALD  ++  IQ  +  ++RGRT + IAHRLSTV D DRI+VL  G + E GSH 
Sbjct: 522 LDEATSALDSHTEREIQGALRDVSRGRTTLVIAHRLSTVIDADRILVLDGGRVAESGSHD 581

Query: 695 QLLAYGKQYKQLWQLQQE 712
            LL     Y  LW+ QQ+
Sbjct: 582 DLLRAEGLYAALWRKQQQ 599