Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  273 bits (699), Expect = 2e-77
 Identities = 174/609 (28%), Positives = 317/609 (52%), Gaps = 20/609 (3%)

Query: 105 NKDKCLIQRPNKETPEVISSHELNSTWNKKSLVIQQAQSRFDIT-----------WFIPE 153
           +KD+ +IQ P     E +S   L + +     +++Q Q R D+            W I  
Sbjct: 107 DKDRAVIQLPETGGEEELSIEALEAMYVGYLFLVKQ-QYRGDMGLDLHLHDSRTHWLIQT 165

Query: 154 FLQHKRVLSEILLFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEV 213
                 +  + L+ S ++ + AL+SPLF   V DKV+ + A+ +L VL  G  I  + ++
Sbjct: 166 LKDSAPIYRDALIASVLVNLFALVSPLFIMNVYDKVVPNLAFESLWVLAIGAGIAYIFDL 225

Query: 214 VLRGLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLT 273
           ++R LR Y       ++DI +  +L     G+PL   +S  +G +  ++ E D+IRE LT
Sbjct: 226 IMRQLRAYLIDVAGKKVDIIVSSRLFAKAIGIPLEK-RSPSIGGMARQLGEFDSIREILT 284

Query: 274 GSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWLT--PRMQAAIEKQFS 331
            +  T  V+L F   F+ ++ +++  L    I  +   +++ + L   PR++AAIE+   
Sbjct: 285 SATITTLVDLPFALFFMLIIYIVAGDLA--IIPVIGGCIIIGYTLLMQPRLKAAIEESNK 342

Query: 332 HAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLL 391
            ++     L E++A  E++KS   E    + W +           V++++    ++    
Sbjct: 343 FSSLKHGHLIESLASIESIKSSGAEGLVQKSWQQMIGHTANWQLKVKKISTSVTNVANFT 402

Query: 392 QKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKL 451
            +++ V ++ LG   V   ++++G +IA  ++++    P+A++  L  +   T  A+ +L
Sbjct: 403 VQLSVVCVVILGVYRVADNDISMGGIIAAVILSSRAISPMAQLAGLMTRGNHTASALRQL 462

Query: 452 GDMLNLPVEQHTGSDNVT---ISGAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVG 508
             ++    E       V+   + G I+  ++ F Y     P ++ +SL I  GE + ++G
Sbjct: 463 DQIMTQEDEFENKGHLVSKHRLKGQINADHVSFNYPGSERPVLHPMSLSIAPGERIAIIG 522

Query: 509 TSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSEN 568
            +GSGKSTLA+LL+ LY P +GS+  DG+    I+   LR+  G + Q+  LFH ++ +N
Sbjct: 523 RNGSGKSTLAKLLVGLYQPTKGSLRYDGLDSAQIHPTDLRRNFGYLPQDITLFHGTIRDN 582

Query: 569 IAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLS 628
           I     + +  ++I A +LSG + F      G D  + EGGQSLS GQRQ +A+AR  L+
Sbjct: 583 ILFGTRQVTEHQLIRAVQLSGVNQFTDIETEGLDQQVGEGGQSLSRGQRQTIALARATLN 642

Query: 629 DPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIV 688
           DP VL++DE T++LD  ++      M ++++ RT++ I H++  +   DRI+VL +G +V
Sbjct: 643 DPPVLLMDEPTASLDARAEKQFIRAMRNVSKERTLLLITHKMHLLNLVDRILVLDRGHLV 702

Query: 689 EQGSHQQLL 697
             G  +Q+L
Sbjct: 703 ADGPKEQVL 711