Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., lipid A ABC transporter ATPase/inner membrane protein from Marinobacter adhaerens HP15

 Score =  249 bits (635), Expect = 3e-70
 Identities = 165/507 (32%), Positives = 270/507 (53%), Gaps = 25/507 (4%)

Query: 219 REYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLTGSMFT 278
           R Y  +    R+   +  K+  HL  L   FF+  +   I +R     T+ + + GS  T
Sbjct: 54  RFYLVSWIGERVVADIRKKVFNHLIDLHPGFFEQNRALEIQSRFTADTTVLQSVIGS--T 111

Query: 279 LTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAW---WLTP------RMQAAIEKQ 329
           +++ L    + +      S+P       T     L  W   W+ P      R++A     
Sbjct: 112 VSIALRNALMLVGGCCCCSSP-------TPNWRALFCWAFPWIAPILFYGRRVRALSRLS 164

Query: 330 FSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYD-VQQLNNRSNHLV 388
               A   S++ E +   +T+++   +P   + + E +E+        ++Q    +   +
Sbjct: 165 QDRVADVGSYVGENLTQIKTVQAFNHQPHDRKYFSEVSERAFEIARQRIRQRAWLTTLAI 224

Query: 389 QLLQKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAI 448
            L+     + ++W+G  +V+   ++ G+L AF   +  +      + E+ G+  +   + 
Sbjct: 225 SLVMGAVGI-VIWIGGLDVIHGRISPGELAAFVFYSLLVGVAAGAISEVIGELQRAAGSA 283

Query: 449 EKLGDMLNL-PVEQHTGSDNVT---ISGAISFKNILFRYQPDIP-PTINDLSLDIRAGET 503
            +L ++L   P  +   S       + GAI  + + F Y   +  P + DLSL++RAGET
Sbjct: 284 ARLFELLQTEPAFERKASTQTLPEHVQGAIRIERLSFSYPGRLEQPALTDLSLEVRAGET 343

Query: 504 LGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHK 563
           L +VG SG+GKSTL  LLL  Y P +G I +DG+    +++  LR+   +V Q   LFH 
Sbjct: 344 LALVGPSGAGKSTLFDLLLHFYQPTEGRILLDGVDTADLSLDALRRCFSLVPQNPALFHG 403

Query: 564 SVSENIAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIA 623
           +V++NI  ++P+AS +++ +AAK++ AHDFI  LP GY T L + G  LSGGQ+QRLAIA
Sbjct: 404 TVADNIRYARPDASQQDVEQAAKVAHAHDFIQSLPKGYGTPLGDAGLGLSGGQKQRLAIA 463

Query: 624 RTLLSDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLH 683
           R LL+D  VL+LDEATSALD ES+ +IQ  M ++  GRT + IAHRL+TVRD DRI V+ 
Sbjct: 464 RALLADAPVLLLDEATSALDAESENLIQQAMPALTAGRTTLVIAHRLATVRDADRIAVMD 523

Query: 684 QGTIVEQGSHQQLLAYGKQYKQLWQLQ 710
           QG ++  G+H +L+ +   Y++L +LQ
Sbjct: 524 QGRLLAVGTHDELMRHNALYQRLAKLQ 550