Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 725 a.a., toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  292 bits (748), Expect = 4e-83
 Identities = 173/564 (30%), Positives = 303/564 (53%), Gaps = 4/564 (0%)

Query: 134 KSLVIQQAQSRFDITWFIPEFLQHKRVLSEILLFSFVLQILALISPLFFQVVMDKVLVHQ 193
           K+ V Q  + +  ++    +       L  +LL S +LQ+ AL++P + Q V+D+VLV Q
Sbjct: 159 KAFVKQDERQQMRLSQLWTKISGVNAALITLLLLSVLLQVFALVTPYYMQWVVDEVLVSQ 218

Query: 194 AWSTLDVLVFGLVITGVIEVVLRGLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSR 253
               L VL  G  +  VI V   G+R +     ++ +++Q+G+ L++HL  LP+ +F+ R
Sbjct: 219 DQPLLIVLAIGFGLLVVINVFTTGVRSWLVLRVSSLLNMQMGVNLLRHLLRLPMNYFEKR 278

Query: 254 QVGAIVTRVRELDTIREFLTGSMFTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVL 313
            +G +V+R   L  +RE LT  +    V+ +     L +M + S  LT + +A V  Y L
Sbjct: 279 HIGDLVSRFGSLAQVRERLTTGLVETVVDGVMSIAVLVMMLIYSVKLTLVVMAAVALYTL 338

Query: 314 LAWWLTPRMQAAIEKQFSHAAANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTT 373
           + + L   +  A E+     A   S   E + G +T+K    E      W  +  +++  
Sbjct: 339 MRFALYRPLHRATEESIQAKAKEQSNFLENIRGIQTIKLFTCESARQGIWQNRYSEVINA 398

Query: 374 GYDVQQLNNRSNHLVQLLQKITSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLAR 433
              + +L    + + +LL  + ++ ++++ A  V+S  +TIG ++AF    N + + +A 
Sbjct: 399 DIRLGRLKISFDAMNKLLFGVENIIVIYMAAMIVMSGGLTIGMVLAFIAYKNQMTERVAS 458

Query: 434 MVELWGQFIQTRVAIEKLGDMLNLPVEQHTGSDNV--TISGAISFKNILFRYQPDIPPTI 491
           ++E    F   R+ ++++ D+     E H         + G +S +N+ FRY  + P  +
Sbjct: 459 LIEQLIMFRMLRLHLDRISDIALHEQEAHQEGFTPLNVVKGRLSLENVSFRYGENEPEVV 518

Query: 492 NDLSLDIRAGETLGVVGTSGSGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRV 551
           ++LSLDI+AGE++ +VG SG GK+TL +L+L L  P  G I +DG  +  I + Q RQ++
Sbjct: 519 SNLSLDIQAGESVAIVGASGCGKTTLVKLMLGLLVPSSGRILLDGQAIQQIGLTQYRQQI 578

Query: 552 GVVLQENFLFHKSVSENIAQSKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQS 611
             V+Q++ L   S+++NI    PE +  ++ + A+L+     I  +PMGY++++ + G  
Sbjct: 579 AAVMQDDTLLSGSIADNITFFDPEPNYVKMQQCAQLAVIDMDIAHMPMGYNSLVGDMGNQ 638

Query: 612 LSGGQRQRLAIARTLLSDPKVLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLS 671
            SGGQ QRL +AR L   P +L +DEATS LD  ++A I   + ++    T I IAHR  
Sbjct: 639 FSGGQVQRLLLARALYQSPSILFMDEATSHLDIMNEAKISEQIKNL--NMTRIIIAHRPE 696

Query: 672 TVRDCDRIIVLHQGTIVEQGSHQQ 695
           T++  DR++V+HQG I+     QQ
Sbjct: 697 TIKQADRVVVMHQGKIMTAEELQQ 720