Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  270 bits (689), Expect = 2e-76
 Identities = 171/604 (28%), Positives = 310/604 (51%), Gaps = 14/604 (2%)

Query: 107 DKCLIQRPNKETPEVISSHELNSTWNKKSLVIQQ---AQSRFDIT-------WFIPEFLQ 156
           D+ +IQ P     E+++   L + +     +++Q       FD+        W +     
Sbjct: 109 DRAVIQLPETGGEEILTIESLETLYVGYLFLVKQEYRGDMGFDVYLHDNKTHWLVQTLKD 168

Query: 157 HKRVLSEILLFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEVVLR 216
              +  + L+ S ++ I AL+SPLF   V DKV+ + A+ +L VL  G  I  + ++V+R
Sbjct: 169 SAPIYRDALIASVLVNIFALVSPLFIMNVYDKVVPNLAFDSLWVLAIGASIAYLFDLVMR 228

Query: 217 GLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLTGSM 276
            LR Y       ++DI +  +L     G+PL   +S  +G +  ++ E D+IRE LT + 
Sbjct: 229 QLRSYLIDVAGKKVDIIVSSRLFAKAIGIPLEK-RSPSIGGMAKQLGEFDSIREILTSAT 287

Query: 277 FTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWLTPRMQAAIEKQFSHAAAN 336
            T  V+L F   FL V+ +++  L  + +      +    +  P+++AAIE+    ++  
Sbjct: 288 ITTLVDLPFALFFLIVIYIVAGDLAVIPVVGGMIIIGFTLYTQPKLKAAIEEGNKFSSLK 347

Query: 337 TSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQKITS 396
              L E+++  E++K+   E    + W +            ++L+N  ++    + + T 
Sbjct: 348 HGHLIESLSALESIKANGAEGIVQKSWQQMIGHSANWQLKSKKLSNSVSNTANFIVQFTV 407

Query: 397 VAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDMLN 456
           V ++ LG   V    +++G +IA  M+++    P+A++  L  +   T  A+ +L +++ 
Sbjct: 408 VCVVILGVYRVSDNLISMGGIIAAVMLSSRAIAPMAQLAGLMTRANHTASALRQLNELML 467

Query: 457 LPVEQHTGSDNVT---ISGAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSGSG 513
              E       V+   + G I+  ++ F Y     P ++ LSL I  GE + ++G +GSG
Sbjct: 468 QEDEFENKGHLVSKQRLIGKINADHVGFSYPGSEKPVLHPLSLTINPGERIAIIGRNGSG 527

Query: 514 KSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQSK 573
           KSTLA+LL+ L+ P  GS+  DG+    I+   LR+  G + Q+  LFH ++ +NI    
Sbjct: 528 KSTLAKLLVGLFQPTTGSLRYDGVDSAQIHPSDLRRNFGYLPQDVTLFHGTIRDNILFGT 587

Query: 574 PEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPKVL 633
            + +  ++I A +LSG   F      G D  + EGG SLS GQRQ +A+AR  L+DP VL
Sbjct: 588 RQVTEHQLIRAVQLSGVSQFTHLEAEGLDQQVGEGGMSLSRGQRQTVALARATLNDPPVL 647

Query: 634 ILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQGSH 693
           ++DE T++LD  ++     +M ++++ RT++ I H++  ++  DRIIVL +G +V  G  
Sbjct: 648 LMDEPTASLDARAEQQFIRSMQNVSKDRTLLLITHKMHLLQLVDRIIVLERGHVVADGPK 707

Query: 694 QQLL 697
            ++L
Sbjct: 708 AEVL 711