Pairwise Alignments

Query, 720 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 725 a.a., ABC transporter related (RefSeq) from Shewanella sp. ANA-3

 Score =  272 bits (695), Expect = 5e-77
 Identities = 176/606 (29%), Positives = 313/606 (51%), Gaps = 18/606 (2%)

Query: 107 DKCLIQRPNKETPEVISSHELNSTWNKKSLVIQQ---AQSRFDIT-------WFIPEFLQ 156
           D+ +IQ P     E+++   L + +     +++Q       FD+        W +     
Sbjct: 109 DRAVIQMPETGGEEILTIESLETLYVGYLFLVKQEYRGDMGFDVYLHDNKTHWLVQTLKD 168

Query: 157 HKRVLSEILLFSFVLQILALISPLFFQVVMDKVLVHQAWSTLDVLVFGLVITGVIEVVLR 216
              +  + L+ S ++ I AL+SPLF   V DKV+ + A+ +L VL  G  I  + ++V+R
Sbjct: 169 SAPIYRDALIASILVNIFALVSPLFIMNVYDKVVPNLAFDSLWVLAIGASIAYLFDLVMR 228

Query: 217 GLREYQYAHTANRIDIQLGLKLVQHLFGLPLMFFKSRQVGAIVTRVRELDTIREFLTGSM 276
            LR Y       ++DI +  +L     G+PL   +S  VG +  ++ E D+IRE LT + 
Sbjct: 229 QLRSYLIDVAGKKVDIIVSSRLFAKAIGIPLEK-RSPSVGGMAKQLGEFDSIREILTSAT 287

Query: 277 FTLTVELLFMFVFLYVMSLLSAPLTGLFIATVPCYVLLAWWL--TPRMQAAIEKQFSHAA 334
            T  V+L F   FL V+ ++S  L    I  V   ++L + L   P+++AAIE+    ++
Sbjct: 288 ITTLVDLPFALFFLIVIYIVSGDLA--VIPVVGGLIILGFTLYTQPKLKAAIEEGNKFSS 345

Query: 335 ANTSFLTETVAGSETLKSLAVEPRFIRRWDEQTEKMVTTGYDVQQLNNRSNHLVQLLQKI 394
                L E+++  E++K+   E    + W +            ++L+N  ++    + + 
Sbjct: 346 LKHGHLIESLSALESIKANGAEGIVQKSWQQMIGHSANWQLRSKKLSNSVSNFANFIVQF 405

Query: 395 TSVAILWLGATEVLSLEMTIGQLIAFNMMTNHIAQPLARMVELWGQFIQTRVAIEKLGDM 454
           T V ++ LG   V    +++G +IA  M+++    P+A++  L  +   T  A+ +L ++
Sbjct: 406 TVVCVVILGVYRVSDNAISMGGIIAAVMLSSRAIAPMAQLAGLLTRANHTASALRQLNEL 465

Query: 455 LNLPVEQHTGSDNVT---ISGAISFKNILFRYQPDIPPTINDLSLDIRAGETLGVVGTSG 511
           +    E       V+   + G I+  ++ F Y     P ++ L+L I  GE + ++G +G
Sbjct: 466 MTQEDEFENKGHLVSKLRLIGKINADHVGFSYPGSEKPVLHPLTLTINPGERVAIIGRNG 525

Query: 512 SGKSTLARLLLRLYSPEQGSITIDGIPLNHINVQQLRQRVGVVLQENFLFHKSVSENIAQ 571
           SGKSTLA+LL+ L+ P  GS+  DG+    I+   LR+  G + Q+  LFH ++ +NI  
Sbjct: 526 SGKSTLAKLLVGLFQPTTGSLRYDGVDSAQIHPSDLRRNFGYLPQDVTLFHGTIRDNILF 585

Query: 572 SKPEASLEEIIEAAKLSGAHDFILKLPMGYDTVLAEGGQSLSGGQRQRLAIARTLLSDPK 631
              + +  ++I A +LSG   F      G D  + EGG SLS GQRQ +A+AR  L+DP 
Sbjct: 586 GTRQVTEHQLIRAVQLSGVSQFTHMEAEGLDQQVGEGGMSLSRGQRQTVALARATLNDPP 645

Query: 632 VLILDEATSALDDESQAVIQANMASIARGRTVITIAHRLSTVRDCDRIIVLHQGTIVEQG 691
           VL++DE T++LD  ++     +M ++++ RT++ I H++  ++  DRIIVL +G +V  G
Sbjct: 646 VLLMDEPTASLDARAEQQFIRSMQNVSKDRTLLLITHKMHLLQLVDRIIVLERGHVVADG 705

Query: 692 SHQQLL 697
              ++L
Sbjct: 706 PKAEVL 711