Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  105 bits (263), Expect = 2e-27
 Identities = 104/409 (25%), Positives = 173/409 (42%), Gaps = 22/409 (5%)

Query: 71  WAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVN 130
           WA    LD  A A G + V    + +Q  E   +  + V DG  V+ G  LL LD     
Sbjct: 40  WAALAPLDSSALAPGVVTVKSYRKTVQHLEGGIVRELRVHDGDLVKTGDVLLVLDN---- 95

Query: 131 QDITRLVSQAEFQTNELIRYRTLLNDQLLTHD--PMFTALPAEQQA--LIHENYLSEKNE 186
              T+  S+ E   ++LI    L        D  P   A+PA   A   + E   SE   
Sbjct: 96  ---TQARSEMETTRSQLIAALQLQARLEAERDALPEPLAVPALDPADPRVQEARDSEARI 152

Query: 187 FDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAARKK-----LNQVKVIGHV 241
           F +   S+  E+ +   +    +  I     +  +  Q LAA  +     L  +   G+V
Sbjct: 153 FQTRRTSLLGEIGLQEKTIGQIEEQIRGFKAIIAS-KQALAASYQEEIVDLRALLAEGYV 211

Query: 242 E---YLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARL 298
           +     EQE+ L   Q ++A+ ++E+       +    ++   K     E       AR 
Sbjct: 212 DKQRLREQERSLSRLQTEIAESQSEIAQAHVHIDEARLKILQLKKTFASEVAGLLGDART 271

Query: 299 QLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAE 358
           ++  L + L+ +++R+Q   I +P  G V  ++V+TLGAV+ P   L+ IVP N     E
Sbjct: 272 KVYELRERLATLQDRDQRTDILAPESGMVMGMTVHTLGAVVSPGTALLDIVPANEELIIE 331

Query: 359 VQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGLV-FPAQIQL 417
            Q+   D+  +  G+   ++  AF  +    I+ +L+ IS D   ++  G   + A++ L
Sbjct: 332 AQVSPMDIDRIALGKLADIRFSAFKSSTTPVIEGQLVQISADRLINKDTGTAYYLARVAL 391

Query: 418 KTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALRE 466
                   G  + L PGM V   + T  R ++ YL+ P     A +L E
Sbjct: 392 TDKGRQALG-NLTLVPGMPVEVLVNTGARTLLQYLIQPASNVFARSLIE 439