Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Type I secretion system, membrane fusion protein LapC from Pseudomonas fluorescens FW300-N2E2

 Score =  144 bits (364), Expect = 5e-39
 Identities = 117/426 (27%), Positives = 202/426 (47%), Gaps = 22/426 (5%)

Query: 55  RVTALTL--SLGVLAAL-LWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRD 111
           RV  LT+   +G    L LWA +  +D      G+ + S + Q +Q+ E   +  + V++
Sbjct: 29  RVVRLTIWGIIGFFVFLALWANFAVIDEVTKGDGKAIPSSKIQKVQNLEGGIVAELFVKE 88

Query: 112 GQRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTH--DPMFTALP 169
           GQ VE GAPL+ LD        TR VS       E  R   LL  + L+   D      P
Sbjct: 89  GQIVEAGAPLIRLDD-------TRFVSNVG--ETEADRLSMLLRVERLSAEVDDRPLNFP 139

Query: 170 AEQQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENISQRLAA- 228
           A+    +     SE++ + S    +  E+   +     RQ ++   +         LA  
Sbjct: 140 ADVLKAVPGQAASEESLYISRRQQLHDEIGGLQEQLIQRQQELREFVSKQAQYRSGLALQ 199

Query: 229 RKKLNQVK------VIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFK 282
           R+++N  +       +  VE L  ++  +E + Q+      +   +S  + ++ ++   +
Sbjct: 200 RQEINMSEPLVAQGAVSPVEVLRLKRAEVETRGQLDATTLAIPRAESAIKEVQRKIDETR 259

Query: 283 AQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPA 342
            + + + L +  +AR  L         + +R    ++ SPV G V +L V T+G V+QP 
Sbjct: 260 GKFRSDALTQLNEARTDLNKAQATGKALEDRVSRTLVTSPVRGIVNKLLVNTIGGVIQPG 319

Query: 343 QNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDST 402
            +L+ IVP +     E +I  +D+ F++PGQ  TVK  A+ YT YG + A+L  I  D+ 
Sbjct: 320 SDLVEIVPLDDTILVEAKIRPQDIAFLHPGQDATVKFTAYDYTIYGGMKAKLEQIGADTI 379

Query: 403 TDE-QLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQA 461
           TDE +    +  +++ + +H+  D + + + PGM    +I T K+ V+ YLL PI + +A
Sbjct: 380 TDEDKKTTYYIIKLRTERSHLGTDEKPLLIIPGMVASVDIITGKKTVLSYLLKPIIKARA 439

Query: 462 EALRER 467
           EAL ER
Sbjct: 440 EALHER 445