Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

 Score = 92.8 bits (229), Expect = 2e-23
 Identities = 90/408 (22%), Positives = 177/408 (43%), Gaps = 20/408 (4%)

Query: 71  WAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVN 130
           WA    LD  A A G + V    + +Q  E   + ++   DG  V++  PL+ LD     
Sbjct: 38  WAAIAPLDGAAYAPGVVTVQAYRKTVQHLEGGIVKALLAHDGDIVKRDDPLIILDD---- 93

Query: 131 QDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPM----FTALPAEQQALIHENYLSEKNE 186
               +L  + E    +LI  R +    +   D +    F  +         E    E   
Sbjct: 94  ---AQLRFEYEMARGQLIAARAMEARLIAERDSLPMISFGDIADPDSVRGMEARQGETRV 150

Query: 187 FDSTLASITAEMKV--NRTSQAARQ-----SDIHALLQLTENISQRLAARKKLNQVKVIG 239
           F +   S   ++ V   R  Q  +Q     S + + + L ++ S  +     L +   + 
Sbjct: 151 FSARQGSRLGQIAVLRERVGQFRQQIKGLESMVGSKVHLEKSYSGEIDELADLLKQGFVD 210

Query: 240 HVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARLQ 299
               LEQE++L   + +VA  R+ ++  + Q    + ++         + +++  + + +
Sbjct: 211 KQRLLEQERKLGLLRSEVADHRSTIDRTRLQINETQLQILQVDKDFNADVVKQLAEVQTR 270

Query: 300 LASLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEV 359
           +  L ++ S + +R    +IR+P  G V  +SV+T+G +++PA  L+ IVP       E 
Sbjct: 271 IYDLKEKTSALEDRLSRIVIRAPEAGMVIDMSVHTIGGIVRPATPLLDIVPSVSDLVIEA 330

Query: 360 QILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGLV-FPAQIQLK 418
           Q+   D+  +  G+   ++  AF       I+ E+ S+S D  T+E+ G   + A++++ 
Sbjct: 331 QVAPVDIDRIAIGKRADIRFGAFNSATTPVIEGEVSSVSADRMTNEKTGTAYYLARVRVT 390

Query: 419 TNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEALRE 466
                  G+  +L PGM     I T +R ++ YL+ P +   ++++ E
Sbjct: 391 EAGARTLGER-KLLPGMPADVLIITGQRTLLQYLMQPARNALSQSMIE 437