Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., hemolysin D from Pseudomonas fluorescens FW300-N2C3

 Score =  110 bits (276), Expect = 7e-29
 Identities = 102/423 (24%), Positives = 185/423 (43%), Gaps = 13/423 (3%)

Query: 53  FARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVIQSYEQSRLLSIHVRDG 112
           F R+  +   +G  +   WA    LD      G +VVSG+ + +QS     +  I VR+G
Sbjct: 25  FTRMGWVLALVGAGSFFTWASLAPLDQGIPVQGTVVVSGKRKAVQSMSSGVVSRILVREG 84

Query: 113 QRVEKGAPLLTLDTLGVNQDITRLVSQAEFQTNELIRYRTLLNDQLLTHDPM-FTALPAE 171
           + V++G PL  LD      D+  L +Q       L R+++  ++ L    P   +  P  
Sbjct: 85  EAVKQGQPLFRLDQTQAAADVQSLQAQYRMTWASLARWQSERDNLLQVSFPAELSRDPDP 144

Query: 172 QQALIHENYLSEKNEFDSTLASITAEMKVNRTSQAARQSDIHALLQLTENIS-QRLAARK 230
           + AL+ E    ++  F S   +   E    R S     + +  + +   +++ Q  + R 
Sbjct: 145 RLALVLEG---QRQLFSSRREAFAREQAALRASIEGATAQLAGMRRARGDLTAQAESLRL 201

Query: 231 KLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWL 290
           +L  ++ +    Y+ + + LL+ QRQ++Q + EL     +   +E+ +   + + Q+   
Sbjct: 202 QLGNLQPLADNGYIPRNR-LLDYQRQLSQVQQELAQNSGESGRVEQGIVESRLKLQQHNE 260

Query: 291 EKRRQARLQLA-------SLNQELSKVREREQLEIIRSPVDGTVQQLSVYTLGAVLQPAQ 343
           E +++ R QLA       +L Q+L       Q   I +  DG    L V+T GAV++   
Sbjct: 261 EYQKEVRSQLADAQLKSETLQQQLKSAGFELQHSEILATADGIAVNLGVHTEGAVVRQGD 320

Query: 344 NLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFPYTRYGTIDAELLSISRDSTT 403
            L+ IVP+    + E  +    +  V P   V +   AF   R   +  E+  IS D   
Sbjct: 321 TLLEIVPQGTRLEVEGHLPVHLIDKVGPHLPVDILFTAFNQNRTPRVPGEVSLISADQML 380

Query: 404 DEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKTDKRRVIDYLLSPIQEYQAEA 463
           DE+ G  +       ++  M     + + PGM     ++T +R +++YL  P+ +    A
Sbjct: 381 DEKTGAPYYVLRSSVSDVAMDKLNGLVIKPGMPAEMFVRTGERSLLNYLFKPLLDRAGSA 440

Query: 464 LRE 466
           L E
Sbjct: 441 LTE 443