Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N1B4

 Score =  158 bits (400), Expect = 3e-43
 Identities = 126/444 (28%), Positives = 211/444 (47%), Gaps = 26/444 (5%)

Query: 37  EFLPAHLALAQRPPSPFARVTALTLSLGVLAALLWAYWGKLDVQATATGRLVVSGRSQVI 96
           EF+P     + +    ++R+T    +  ++ AL+WA +  L    T  G+ + S + QVI
Sbjct: 24  EFMPETAGASLQDSPRWSRITVWLAAALLITALVWAKFAVLQEVTTGEGKAIPSSKIQVI 83

Query: 97  QSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGV-------NQDITRLVSQAEFQTNELIR 149
           Q+ E   +  I VR+GQ V KG  LL LD             D   L +Q E  + E   
Sbjct: 84  QNLEGGIVTEIFVREGQMVNKGDTLLRLDDTRFLSNKGESEADRYALTAQVERLSAEAEG 143

Query: 150 YRTLLNDQLLTHDPMFTALPAEQQALIHEN----YLSEKNEFDSTLASITAEMKVNRTSQ 205
               L+ +++   P      AE +  ++E       SE+      L   T E+   R+ Q
Sbjct: 144 RPFKLSAEVIAKAPQV----AEDERSLYEQRQRRLASEQRTLTEQLRQKTQELAEFRSKQ 199

Query: 206 AARQSDIHALLQLTENISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQRQVAQQRAELE 265
               S + ALLQ   N+S  L     ++ V+++       + +  L A   +A  RAE  
Sbjct: 200 GQFSSSL-ALLQQEMNMSAPLVGTGAVSPVEILRLKRSAVEIRGSLNATT-LAIPRAESA 257

Query: 266 V--LKSQYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVREREQLEIIRSPV 323
           +  +KS+ +  E+    F++   +E  EKR      L+ +      + +R     + SPV
Sbjct: 258 INEIKSKIDESEQ---SFRSDAAKELNEKRTD----LSKITATSIAIDDRVTRTTVVSPV 310

Query: 324 DGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQSVTVKVDAFP 383
            G ++ L V T+G V+QP  +++ IVP       E ++  +DV F++PGQ   VK  A+ 
Sbjct: 311 HGIIKMLKVNTIGGVVQPGNDMVEIVPLEDNLLIEAKVRPQDVAFLHPGQKAMVKFSAYD 370

Query: 384 YTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPGMSVVAEIKT 443
           YT YG + A+L  I  D+ TD++    +  Q++   NH+  D + + + PGM    +I T
Sbjct: 371 YTIYGGLSAKLELIGADTITDDKGNSFYLIQVRTDKNHLGGDVKPLLIIPGMVATVDIIT 430

Query: 444 DKRRVIDYLLSPIQEYQAEALRER 467
            ++ V+DYLL P+ + + EA+RER
Sbjct: 431 GEKSVLDYLLKPVLKARTEAMRER 454