Pairwise Alignments

Query, 467 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., type I secretion membrane fusion protein, HlyD family from Pseudomonas stutzeri RCH2

 Score =  155 bits (393), Expect = 2e-42
 Identities = 120/453 (26%), Positives = 206/453 (45%), Gaps = 22/453 (4%)

Query: 23  FGQKSPHQPTEHHYEFLPAHLALAQRPPSPF-ARVTALTLSLGVLAALLWAYWGKLDVQA 81
           FG++   Q TE+  E   A L       SP+ AR+T    +L + A L+WA +  L+   
Sbjct: 12  FGRRK--QDTEYMPEIQGAILE-----DSPWLARLTVWLTALLLAAVLIWANYAVLEEVT 64

Query: 82  TATGRLVVSGRSQVIQSYEQSRLLSIHVRDGQRVEKGAPLLTLDTLGVNQDITRLVSQAE 141
           T  G+ + S + Q +Q+ E   +  I+VR+GQ V KG  LL LD        TR +S  E
Sbjct: 65  TGEGKAIPSSKIQTVQNLEGGIVAQIYVREGQVVNKGDTLLRLDN-------TRFLSNQE 117

Query: 142 FQTNELIRYRTLLNDQLLTHDPMFTALPAEQQALIHENYLSEKNEFDSTLASITAEMKVN 201
               E +     +       +    ALP E      +    E+  ++S    + +E ++ 
Sbjct: 118 ETEAERLSLLARVERLAAEAEGRPLALPEEITRDAPQLAEDERALYESRQQRLRSEQRIL 177

Query: 202 RTSQAARQSDIHALLQLTEN-------ISQRLAARKKLNQVKVIGHVEYLEQEKELLEAQ 254
           +     +Q ++       +        I Q L     L +   I  VE L   + +++ +
Sbjct: 178 KEQLTQKQQEVAEFRSKQQQYRSSLSLIQQELNMSTPLVETGAISQVEILRLRRSIVDVR 237

Query: 255 RQVAQQRAELEVLKSQYESLEERLTGFKAQKQREWLEKRRQARLQLASLNQELSKVRERE 314
             +      L   ++    ++ R+   +   + E  +    AR  L  +      + +R 
Sbjct: 238 GALDATTLALPRAEAAASEIQSRIEQSELAFRAEAFKDLNAARTLLQKITATSVAIDDRV 297

Query: 315 QLEIIRSPVDGTVQQLSVYTLGAVLQPAQNLMIIVPENRVQQAEVQILNKDVGFVYPGQS 374
               + SPV G ++QL + T+G V+QP  +L+ IVP       E ++  +D+ F++PGQ 
Sbjct: 298 SRTTVVSPVHGIIKQLRINTIGGVVQPGSDLLEIVPLEDSLLIEAKVRPQDIAFLHPGQK 357

Query: 375 VTVKVDAFPYTRYGTIDAELLSISRDSTTDEQLGLVFPAQIQLKTNHIMIDGQTVELTPG 434
             VK  A+ YT YG + A L  IS D+ TD+     +  Q++ + N++   G  + + PG
Sbjct: 358 AMVKFSAYDYTIYGGLKANLELISADTITDKDGRSFYLIQVRTEKNYLGSPGHQLVIIPG 417

Query: 435 MSVVAEIKTDKRRVIDYLLSPIQEYQAEALRER 467
           M    +I T ++ V+DY+L PI + + EALRER
Sbjct: 418 MVATVDIITGEKSVLDYMLKPILKARHEALRER 450